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9
votes
3
replies
2.3k
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How to find polyA sites from gtf/gff?
genome gene
updated 3.3 years ago by • 0 • written 7.1 years ago by ▴ 640
1
vote
1
reply
8.6k
views
Comment: Comment: STARsolo config for 10x Chromium v1, v2, v3
3.5 years ago by goodez ▴ 640
16
votes
9
replies
9.3k
views
Find consensus overlap between many bed files
genome bedtools overlap intersect
updated 5.0 years ago by 20 • written 7.0 years ago by ▴ 640
0
votes
1
reply
1.2k
views
Comment: C: merging two python dictionaries
6.0 years ago by goodez ▴ 640
0
votes
1
reply
1.2k
views
Answer: A: merging two python dictionaries
6.0 years ago by goodez ▴ 640
0
votes
1
reply
1.4k
views
Comment: C: Loading bigiwg into an an array in javascript?
6.0 years ago by goodez ▴ 640
0
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0
replies
3.7k
views
Comment: C: Identify RNA-seq reads containing polyA sequence
6.1 years ago by goodez ▴ 640
0
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1
reply
3.7k
views
Comment: C: Identify RNA-seq reads containing polyA sequence
6.1 years ago by goodez ▴ 640
2
votes
5
replies
3.7k
views
Identify RNA-seq reads containing polyA sequence
RNA-Seq
updated 6.1 years ago by ★ 2.4k • written 6.1 years ago by ▴ 640
0
votes
0
replies
17k
views
Comment: C: How to use edgeR to compare multiple conditions to reference condtiion
6.2 years ago by goodez ▴ 640
0
votes
1
reply
4.9k
views
Answer: A: ERCC Spike-in analysis without using any packages
6.3 years ago by goodez ▴ 640
3
votes
1
reply
3.2k
views
Comment: C: for low coverage RNAseq how many reads assigned is the bare minimum for differen
6.3 years ago by goodez ▴ 640
0
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0
replies
1.5k
views
Comment: C: Explanation? Read depth, quality, and assembly accuracy in Methylome analysis co
6.4 years ago by goodez ▴ 640
0
votes
1
reply
1.5k
views
Comment: C: Explanation? Read depth, quality, and assembly accuracy in Methylome analysis co
6.4 years ago by goodez ▴ 640
1
vote
0
replies
2.0k
views
Answer: A: Obtain Number of PE Reads in BAM file Mapped to Each Chromosome
6.4 years ago by goodez ▴ 640
0
votes
0
replies
2.5k
views
Comment: C: Where to find a list of stress response genes?
6.5 years ago by goodez ▴ 640
0
votes
1
reply
2.5k
views
Comment: C: Where to find a list of stress response genes?
6.5 years ago by goodez ▴ 640
3
votes
12
replies
2.5k
views
Where to find a list of stress response genes?
gene annotation
updated 6.5 years ago by 8.4k • written 6.6 years ago by ▴ 640
0
votes
0
replies
2.5k
views
Comment: C: Meaning of the 5th column in repeatmasker BED format results
6.5 years ago by goodez ▴ 640
0
votes
0
replies
1.3k
views
Comment: C: Pindel -x option
6.5 years ago by goodez ▴ 640
1
vote
0
replies
3.7k
views
Comment: C: Issues with Marking Duplicates in Picard
6.5 years ago by goodez ▴ 640
0
votes
1
reply
3.7k
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Comment: C: Issues with Marking Duplicates in Picard
6.5 years ago by goodez ▴ 640
2
votes
1
reply
3.7k
views
Answer: A: Issues with Marking Duplicates in Picard
6.5 years ago by goodez ▴ 640
5
votes
1
reply
3.3k
views
Bowtie2 reports no secondary alignments
alignment bowtie2
6.5 years ago by goodez ▴ 640
4
votes
0
replies
3.3k
views
Answer: A: Bowtie2 reports no secondary alignments
6.5 years ago by goodez ▴ 640
0
votes
1
reply
1.3k
views
Answer: A: Pindel -x option
6.6 years ago by goodez ▴ 640
0
votes
0
replies
2.5k
views
Comment: C: Where to find a list of stress response genes?
6.6 years ago by goodez ▴ 640
0
votes
1
reply
2.5k
views
Comment: C: Where to find a list of stress response genes?
6.6 years ago by goodez ▴ 640
0
votes
2
replies
2.5k
views
Comment: C: Where to find a list of stress response genes?
6.6 years ago by goodez ▴ 640
0
votes
1
reply
6.1k
views
Comment: C: pysam difference between template_length and reference_length
6.6 years ago by goodez ▴ 640
0
votes
1
reply
6.1k
views
Comment: C: pysam difference between template_length and reference_length
6.6 years ago by goodez ▴ 640
0
votes
1
reply
2.5k
views
Comment: C: Extract sequences from the raw reads
6.6 years ago by goodez ▴ 640
0
votes
2
replies
5.2k
views
Comment: C: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
6.6 years ago by goodez ▴ 640
0
votes
1
reply
4.7k
views
Comment: C: Apply Deseq2 size factor to aligned reads
6.6 years ago by goodez ▴ 640
5
votes
1
reply
7.0k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
1
vote
0
replies
2.7k
views
Comment: C: How to annotate chloroplast genome
6.6 years ago by goodez ▴ 640
1
vote
1
reply
2.7k
views
Comment: C: How to annotate chloroplast genome
6.6 years ago by goodez ▴ 640
1
vote
1
reply
2.7k
views
Answer: A: How to annotate chloroplast genome
updated 6.6 years ago by 151k • written 6.6 years ago by ▴ 640
0
votes
1
reply
2.0k
views
Comment: C: Abyss run time
6.6 years ago by goodez ▴ 640
0
votes
3
replies
7.0k
views
Answer: A: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
0
votes
0
replies
7.0k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
0
votes
2
replies
7.0k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
0
votes
1
reply
7.0k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
1
vote
1
reply
7.0k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
0
votes
2
replies
7.0k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
0
votes
1
reply
7.0k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
0
votes
1
reply
7.0k
views
Comment: C: SNPGenie: CDS does not have length that is divisible by 3
6.6 years ago by goodez ▴ 640
0
votes
0
replies
1.4k
views
Answer: A: make a reference genome for BRIG (pan-genome analysis)
6.7 years ago by goodez ▴ 640
0
votes
1
reply
7.1k
views
Comment: C: Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
6.7 years ago by goodez ▴ 640
0
votes
1
reply
7.1k
views
Comment: C: Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
6.7 years ago by goodez ▴ 640
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