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1
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6
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6.6k
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Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
genome ChIP-Seq
updated 22 months ago by • 0 • written 6.1 years ago by ▴ 640
1
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1
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2.3k
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Comment: C: GFF file multiple features for 1 gene region, how to collapse into 1?
6.1 years ago by goodez ▴ 640
1
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1
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2.4k
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Comment: C: How I can pars this file by R or bash?
6.1 years ago by goodez ▴ 640
0
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1
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1.0k
views
How/where to obtain a bigwig or bedgraph of unmappable genome regions?
alignment genome
6.1 years ago by goodez ▴ 640
0
votes
1
reply
5.2k
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Comment: C: DESeq2 DEG analysis using different sequencing depth data
6.1 years ago by goodez ▴ 640
1
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3
replies
1.7k
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Where to find snRNA annotations?
annotation ChIP-Seq
6.1 years ago by goodez ▴ 640
1
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2
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1.7k
views
Answer: A: Where to find snRNA annotations?
6.1 years ago by goodez ▴ 640
0
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0
replies
3.3k
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Comment: C: question about calling peak by macs2
6.2 years ago by goodez ▴ 640
0
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0
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1.0k
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Comment: C: D. mel gene table with strand and position data? Investigating strand bias
6.2 years ago by goodez ▴ 640
0
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0
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1.0k
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Answer: A: D. mel gene table with strand and position data? Investigating strand bias
6.2 years ago by goodez ▴ 640
0
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1
reply
2.7k
views
Comment: C: Gene Name from PDB id
6.2 years ago by goodez ▴ 640
0
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0
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2.7k
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Answer: A: Gene Name from PDB id
6.2 years ago by goodez ▴ 640
0
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1
reply
3.3k
views
Answer: A: question about calling peak by macs2
6.2 years ago by goodez ▴ 640
0
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0
replies
4.5k
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Comment: C: Error: package or namespace load failed for ReactomePA
6.2 years ago by goodez ▴ 640
0
votes
1
reply
1.7k
views
Answer: A: Consensus motif of closely related TFs
6.2 years ago by goodez ▴ 640
0
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1
reply
3.3k
views
Comment: C: question about calling peak by macs2
6.2 years ago by goodez ▴ 640
1
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2
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3.3k
views
Comment: C: question about calling peak by macs2
6.2 years ago by goodez ▴ 640
0
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0
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2.5k
views
Answer: A: RUVSeq with ERCC spike-ins Mix1 and Mix2
6.2 years ago by goodez ▴ 640
0
votes
1
reply
16k
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Comment: C: How to use edgeR to compare multiple conditions to reference condtiion
6.3 years ago by goodez ▴ 640
0
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2
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3.8k
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Comment: C: What is a read group?
6.3 years ago by goodez ▴ 640
0
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1
reply
5.5k
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Comment: C: Quick and easy way to get alignment stats from many SAM/BAM files?
6.4 years ago by goodez ▴ 640
7
votes
5
replies
5.5k
views
Quick and easy way to get alignment stats from many SAM/BAM files?
RNA-Seq alignment
6.4 years ago by goodez ▴ 640
1
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0
replies
2.0k
views
Comment: C: Merging individual .bed files?
6.4 years ago by goodez ▴ 640
0
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0
replies
3.2k
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Comment: C: Difference in BAM coverage between bedtools output and IGV coverage track
6.4 years ago by goodez ▴ 640
0
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0
replies
1.3k
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Comment: C: Question on BIGWIG tracks from Chip Seq experiments
6.4 years ago by goodez ▴ 640
0
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1
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1.1k
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Comment: C: ChIPseq vs RNAseq results comparison
6.4 years ago by goodez ▴ 640
4
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0
replies
3.5k
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Answer: A: Meaning of Decimal points in ENST notation
6.4 years ago by goodez ▴ 640
0
votes
0
replies
1.4k
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Answer: A: filter data based on values
6.4 years ago by goodez ▴ 640
1
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0
replies
1.4k
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Comment: C: filter data based on values
6.4 years ago by goodez ▴ 640
0
votes
1
reply
1.1k
views
Comment: C: How to loop over several samples with QDNAseq
6.4 years ago by goodez ▴ 640
2
votes
0
replies
1.6k
views
Comment: C: python and bidirectional hit
6.4 years ago by goodez ▴ 640
0
votes
0
replies
7.9k
views
Comment: C: Find consensus overlap between many bed files
6.4 years ago by goodez ▴ 640
0
votes
1
reply
7.9k
views
Comment: C: Find consensus overlap between many bed files
6.4 years ago by goodez ▴ 640
0
votes
0
replies
7.9k
views
Comment: C: Find consensus overlap between many bed files
6.4 years ago by goodez ▴ 640
0
votes
0
replies
7.9k
views
Comment: C: Find consensus overlap between many bed files
6.4 years ago by goodez ▴ 640
0
votes
0
replies
5.6k
views
Comment: C: Plot multiple bed files using R package Gviz
6.4 years ago by goodez ▴ 640
0
votes
1
reply
2.1k
views
Comment: C: Normalize coverage to spike-in chromatin
6.4 years ago by goodez ▴ 640
0
votes
1
reply
7.4k
views
Comment: C: Empty output from MACS2 when using control
6.4 years ago by goodez ▴ 640
0
votes
0
replies
2.1k
views
Comment: C: Normalize coverage to spike-in chromatin
6.4 years ago by goodez ▴ 640
1
vote
4
replies
2.1k
views
Normalize coverage to spike-in chromatin
ChIP-Seq Normalization
updated 6.4 years ago by 104k • written 6.4 years ago by ▴ 640
0
votes
1
reply
4.6k
views
Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
6.4 years ago by goodez ▴ 640
0
votes
1
reply
4.6k
views
Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
6.4 years ago by goodez ▴ 640
0
votes
1
reply
4.6k
views
Comment: C: Duplicate SAMSequenceDictionary in SAM file - how to modify SAM header?
6.4 years ago by goodez ▴ 640
0
votes
1
reply
1.9k
views
Comment: C: copy number file format issue
6.4 years ago by goodez ▴ 640
0
votes
1
reply
1.9k
views
Comment: C: copy number file format issue
6.4 years ago by goodez ▴ 640
1
vote
0
replies
8.2k
views
Answer: A: Python script to remove sequences from a fasta file
6.4 years ago by goodez ▴ 640
0
votes
0
replies
8.2k
views
Comment: C: Python script to remove sequences from a fasta file
6.4 years ago by goodez ▴ 640
0
votes
0
replies
4.3k
views
Comment: C: Extract uniquely mapped reads from one species
6.4 years ago by goodez ▴ 640
2
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2
replies
4.3k
views
Answer: A: Extract uniquely mapped reads from one species
6.4 years ago by goodez ▴ 640
0
votes
1
reply
4.3k
views
Comment: C: Extract uniquely mapped reads from one species
6.4 years ago by goodez ▴ 640
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