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Comment: Comment: JoinLayers to find markers in merged or integrated analysis in seurat
10 months ago by mohammedtoufiq91 ▴ 260
2
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2
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5.9k
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JoinLayers to find markers in merged or integrated analysis in seurat
scRNA-seq seurat FindMarkers
10 months ago by mohammedtoufiq91 ▴ 260
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
12 months ago by mohammedtoufiq91 ▴ 260
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1
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2.2k
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
12 months ago by mohammedtoufiq91 ▴ 260
2
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4
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2.2k
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How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objects in R?
scrna-seq seurat signac
12 months ago by mohammedtoufiq91 ▴ 260
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0
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4.8k
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Comment: Comment: Illumina HumanHT-12 V3.0 expression beadchip reading data
20 months ago by mohammedtoufiq91 ▴ 260
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0
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1.7k
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Comment: Comment: How to retrieve Microarray probe annotations
21 months ago by mohammedtoufiq91 ▴ 260
4
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2
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1.7k
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How to retrieve Microarray probe annotations
org.Hs.eg.db annotables AnnotationDbi Microarray R
21 months ago by mohammedtoufiq91 ▴ 260
3
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4
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2.5k
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Issues marking genes in ComplexHeatmap
pheatmap complexheatmap heatmap ggplot2 R
updated 5 months ago by • 0 • written 21 months ago by ▴ 260
3
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1
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2.5k
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Answer: Answer: Issues marking genes in ComplexHeatmap
21 months ago by mohammedtoufiq91 ▴ 260
0
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0
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2.5k
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Comment: Comment: Issues marking genes in ComplexHeatmap
21 months ago by mohammedtoufiq91 ▴ 260
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0
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1.8k
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Comment: Comment: Question about RNA-Seq data alignment
22 months ago by mohammedtoufiq91 ▴ 260
1
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0
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1.8k
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Comment: Comment: Question about RNA-Seq data alignment
22 months ago by mohammedtoufiq91 ▴ 260
7
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9
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1.8k
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Question about RNA-Seq data alignment
STAR Alignment BBMAP RNA-Seq Bowtie
22 months ago by mohammedtoufiq91 ▴ 260
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0
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1.8k
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Comment: Comment: Question about RNA-Seq data alignment
22 months ago by mohammedtoufiq91 ▴ 260
0
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1
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1.8k
views
Comment: Comment: Question about RNA-Seq data alignment
22 months ago by mohammedtoufiq91 ▴ 260
1
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1
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1.0k
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Comment: Comment: How to map and annotate gene symbols to gene type?
22 months ago by mohammedtoufiq91 ▴ 260
5
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3
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1.0k
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How to map and annotate gene symbols to gene type?
Ensembl RefSeq UCSC biomart RNA-Seq
updated 22 months ago by 148k • written 22 months ago by ▴ 260
0
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0
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1.6k
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Comment: Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
24 months ago by mohammedtoufiq91 ▴ 260
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1
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1.6k
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Comment: Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
24 months ago by mohammedtoufiq91 ▴ 260
2
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4
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1.6k
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Unable to run RSEM because of error rsem-parse-alignments : No such file or directory
RNA-Seq Bowtie2 RSEM Boost
24 months ago by mohammedtoufiq91 ▴ 260
0
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0
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606
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How to identify mitochondrial contamination in RNAseq and QC data?
QC FastQC MultiQC alignment rna-seq
24 months ago by mohammedtoufiq91 ▴ 260
0
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0
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2.1k
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Comment: Comment: Possibility of marking genes of interest by in ComplexHeatmap
2.0 years ago by mohammedtoufiq91 ▴ 260
0
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1
reply
2.1k
views
Comment: Comment: Possibility of marking genes of interest by in ComplexHeatmap
2.0 years ago by mohammedtoufiq91 ▴ 260
5
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4
replies
2.1k
views
Possibility of marking genes of interest by in ComplexHeatmap
heatmap ggplot2 R complexheatmap
2.0 years ago by mohammedtoufiq91 ▴ 260
0
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0
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1.7k
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Comment: Comment: Plot heatmap by average based on sample groups
2.0 years ago by mohammedtoufiq91 ▴ 260
2
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2
replies
1.7k
views
Plot heatmap by average based on sample groups
pheatmap complexheatmap heatmap ggplot2 R
2.0 years ago by mohammedtoufiq91 ▴ 260
1
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0
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435
views
How to find miRNAs targeting genes using a list in R?
PicTar miRBase miRNA PITA R
2.1 years ago by mohammedtoufiq91 ▴ 260
1
vote
1
reply
937
views
Representation of variables in PCA
ggplot2 biplot R pcatools pca
updated 2.2 years ago by ▴ 520 • written 2.2 years ago by ▴ 260
0
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0
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4.1k
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Comment: Comment: How to adjust font size of row_split labels in ComplexHeatmap R package
2.5 years ago by mohammedtoufiq91 ▴ 260
5
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2
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4.1k
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How to adjust font size of row_split labels in ComplexHeatmap R package
Heatmap ComplexHeatmap R labels
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 260
1
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3
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1.9k
views
Help with plotting heatmap with both row and column label annotations
pheatmap ComplexHeatmap R Heatmap annotations
updated 2.6 years ago by ★ 1.8k • written 2.6 years ago by ▴ 260
0
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0
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1.9k
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Comment: Comment: Help with plotting heatmap with both row and column label annotations
2.6 years ago by mohammedtoufiq91 ▴ 260
0
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0
replies
1.6k
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Comment: Comment: Extraction of high variance or contributing genes using pcatools
2.6 years ago by mohammedtoufiq91 ▴ 260
0
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1
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1.6k
views
Comment: Comment: Extraction of high variance or contributing genes using pcatools
2.6 years ago by mohammedtoufiq91 ▴ 260
5
votes
5
replies
1.6k
views
Extraction of high variance or contributing genes using pcatools
PCAtools FactoMineR R prcomp PCA
2.6 years ago by mohammedtoufiq91 ▴ 260
0
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1
reply
899
views
Comment: Comment: How to label genes passing the p-value and fold change cut-offs in EnhancedVolca
2.7 years ago by mohammedtoufiq91 ▴ 260
4
votes
3
replies
899
views
How to label genes passing the p-value and fold change cut-offs in EnhancedVolcano?
EnhancedVolcano volcano label R genes
updated 2.7 years ago by 148k • written 2.7 years ago by ▴ 260
0
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0
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1.3k
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Comment: Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
2.7 years ago by mohammedtoufiq91 ▴ 260
0
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0
replies
1.3k
views
Comment: Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
2.7 years ago by mohammedtoufiq91 ▴ 260
5
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4
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1.3k
views
Unable to open pdf file of volcano plots created using many group comparisons from EnhancedVolcano package in R
tidyverse forloops EnhancedVolcano volcano R
2.7 years ago by mohammedtoufiq91 ▴ 260
0
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0
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1.8k
views
Comment: Comment: Error in ComplexHeatmap while adding barplot as column annotations
2.7 years ago by mohammedtoufiq91 ▴ 260
2
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2
replies
1.8k
views
Error in ComplexHeatmap while adding barplot as column annotations
ComplexHeatmap heatmap barplot R annotation
2.7 years ago by mohammedtoufiq91 ▴ 260
0
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0
replies
5.1k
views
Comment: Comment: How to add color scheme for many groups in PCA using R?
2.9 years ago by mohammedtoufiq91 ▴ 260
0
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1
reply
5.1k
views
Comment: Comment: How to add color scheme for many groups in PCA using R?
2.9 years ago by mohammedtoufiq91 ▴ 260
6
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4
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5.1k
views
How to add color scheme for many groups in PCA using R?
R biplot PCA PCAtools ggplot2
2.9 years ago by mohammedtoufiq91 ▴ 260
0
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0
replies
1.7k
views
Comment: Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
3.0 years ago by mohammedtoufiq91 ▴ 260
0
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1
reply
1.7k
views
Comment: Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
3.0 years ago by mohammedtoufiq91 ▴ 260
6
votes
4
replies
1.7k
views
Batch effect correction: Input data format for removeBatchEffect from limma package
R effects limma batch removeBatchEffect
updated 3.0 years ago by ★ 7.7k • written 3.0 years ago by ▴ 260
0
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0
replies
9.4k
views
Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
3.0 years ago by mohammedtoufiq91 ▴ 260
191 results • Page 1 of 4
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