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Comment: C: Why is mapper.pl from mirdeep2 producing an empty mapping file?
4.3 years ago by Barry Digby ★ 1.3k
3
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3
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2.3k
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Answer: A: TCGA gene and mirna expression value
4.3 years ago by Barry Digby ★ 1.3k
2
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2
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1.9k
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Answer: A: Help interpretating DESeq2 output
4.3 years ago by Barry Digby ★ 1.3k
3
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2
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5.2k
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Tximport > DESeq2 (sample names)
tximport DESeq2 RNA-Seq
updated 5 weeks ago by 45k • written 6.3 years ago by ★ 1.3k
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5.9k
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Answer: A: GATK Panel Of Normals (PoN)
4.3 years ago by Barry Digby ★ 1.3k
3
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1
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1.6k
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Answer: C: HT-Seq count data coding gene
4.3 years ago by Barry Digby ★ 1.3k
2
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0
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1.6k
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Answer: A: Circlize genomicLabel won't plot outside.
4.4 years ago by Barry Digby ★ 1.3k
2
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1
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1.6k
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Circlize genomicLabel won't plot outside.
Circlize
4.4 years ago by Barry Digby ★ 1.3k
2
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0
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4.9k
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Answer: A: How to take input TCGA miRNA data in Limma R package for differential expression
4.4 years ago by Barry Digby ★ 1.3k
1
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0
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4.8k
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Comment: C: How to select differential expressed genes using DeSeq2?
4.4 years ago by Barry Digby ★ 1.3k
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1
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4.8k
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Comment: Comment: How to select differential expressed genes using DeSeq2?
19 months ago by Barry Digby ★ 1.3k
5
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1
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4.8k
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Answer: C: How to select differential expressed genes using DeSeq2?
4.4 years ago by Barry Digby ★ 1.3k
0
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0
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3.2k
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Comment: C: STAR index file for GRCH37
4.4 years ago by Barry Digby ★ 1.3k
0
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1
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1.7k
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Comment: C: DESeq2 analysis with high number of samples
4.5 years ago by Barry Digby ★ 1.3k
1
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0
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1.2k
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Comment: C: TCGA- which files to download for analyzing differentially expressed miRNAs
4.5 years ago by Barry Digby ★ 1.3k
1
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1
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1.2k
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Comment: C: TCGA- which files to download for analyzing differentially expressed miRNAs
4.5 years ago by Barry Digby ★ 1.3k
1
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0
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2.5k
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Answer: A: GATK4 best practices: 1500 lines of code ... !?
4.5 years ago by Barry Digby ★ 1.3k
0
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0
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3.6k
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Exporting PATH in Dockerfile
conda docker python
4.5 years ago by Barry Digby ★ 1.3k
5
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1
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7.9k
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Answer: A: How to prepare .gct file for GSEA software?
4.5 years ago by Barry Digby ★ 1.3k
0
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0
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1.8k
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Answer: A: calculating fold change
4.6 years ago by Barry Digby ★ 1.3k
0
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0
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5.4k
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Comment: C: Specify output dir when downloading snpEff database?
4.6 years ago by Barry Digby ★ 1.3k
0
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0
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1.8k
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Answer: A: RNA seq data analysis
4.7 years ago by Barry Digby ★ 1.3k
1
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0
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7.9k
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Comment: C: How to prepare .gct file for GSEA software?
4.7 years ago by Barry Digby ★ 1.3k
1
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1
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3.2k
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Comment: C: How to deal with the abnormal samples from TCGA found in a PCA?
4.7 years ago by Barry Digby ★ 1.3k
0
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1
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9.4k
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Comment: C: Nextflow using existing Conda Environments
4.7 years ago by Barry Digby ★ 1.3k
0
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1
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9.4k
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Comment: C: Nextflow using existing Conda Environments
4.7 years ago by Barry Digby ★ 1.3k
0
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0
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2.7k
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Comment: C: miRDeep2 problem with reads_collapsed.fa
4.7 years ago by Barry Digby ★ 1.3k
0
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1
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2.7k
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Comment: C: miRDeep2 problem with reads_collapsed.fa
4.7 years ago by Barry Digby ★ 1.3k
0
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1
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2.7k
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Answer: A: miRDeep2 problem with reads_collapsed.fa
4.7 years ago by Barry Digby ★ 1.3k
1
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0
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9.4k
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Comment: C: Nextflow using existing Conda Environments
4.8 years ago by Barry Digby ★ 1.3k
5
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7
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9.4k
views
Nextflow using existing Conda Environments
nextflow conda anaconda
updated 4.8 years ago by 87k • written 4.8 years ago by ★ 1.3k
1
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0
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9.4k
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Answer: A: Nextflow using existing Conda Environments
4.8 years ago by Barry Digby ★ 1.3k
0
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0
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17k
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Comment: C: How to create a GSEA enrichment plot for the phenotypes in R?
4.8 years ago by Barry Digby ★ 1.3k
1
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1
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17k
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Answer: A: How to create a GSEA enrichment plot for the phenotypes in R?
4.8 years ago by Barry Digby ★ 1.3k
0
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0
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1.5k
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Comment: C: Where is a good place to find experienced, ongoing, bioinformatics help?
4.8 years ago by Barry Digby ★ 1.3k
1
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1
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2.8k
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Comment: C: Massive L2FC in DESeq2
4.9 years ago by Barry Digby ★ 1.3k
1
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0
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1.0k
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circRNA - miRNA ceRNA network construction
circRNA miRNA ceRNA CSCD circinteractome
4.9 years ago by Barry Digby ★ 1.3k
0
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0
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1.4k
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Answer: A: miRDeep2 Mapper "Bowtie mapping tool not installed"
4.9 years ago by Barry Digby ★ 1.3k
1
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0
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652
views
Answer: A: Predict which genes might cause treatment response or lack of response
4.9 years ago by Barry Digby ★ 1.3k
1
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1
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1.5k
views
Answer: A: Where is a good place to find experienced, ongoing, bioinformatics help?
4.9 years ago by Barry Digby ★ 1.3k
0
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1
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5.3k
views
Comment: C: can I use some interesting genes(such as a subset of DEGs from RNA-seq result) t
5.0 years ago by Barry Digby ★ 1.3k
0
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0
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2.6k
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Comment: C: Editing tools script in a docker container
5.0 years ago by Barry Digby ★ 1.3k
1
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4
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2.6k
views
Editing tools script in a docker container
docker dockerhub singularity
5.0 years ago by Barry Digby ★ 1.3k
0
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0
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2.6k
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Answer: A: Editing source scripts in a container
5.0 years ago by Barry Digby ★ 1.3k
3
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0
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1.7k
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Answer: A: In need of guidance: RNA-seq analysis
5.1 years ago by Barry Digby ★ 1.3k
0
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0
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1.4k
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Comment: C: How to perform iteration task inside a docker image (RNA-seq analysis)
5.1 years ago by Barry Digby ★ 1.3k
1
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1
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1.4k
views
Answer: A: How to perform iteration task inside a docker image (RNA-seq analysis)
5.1 years ago by Barry Digby ★ 1.3k
6
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8
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3.0k
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bustools transcript to gene file
bustools kallisto scRNA nextflow ensembl
5.1 years ago by Barry Digby ★ 1.3k
0
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0
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2.7k
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Comment: C: Missing gene symbols in bustools output
5.1 years ago by Barry Digby ★ 1.3k
0
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0
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2.7k
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Comment: C: Missing gene symbols in bustools output
5.1 years ago by Barry Digby ★ 1.3k
145 results • Page 2 of 3
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