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comments
2
votes
1
reply
664
views
how can I remove the unwanted fasta sequences?
sequence
4.0 years ago by
Yingzi Zhang
▴ 90
1
vote
1
reply
1.6k
views
In cytoscape, how to filter all nodes and edges directly or indirectly connected with 2 certain nodes?
cytoscape
updated 4.5 years ago by
scooter
▴ 620 • written 4.5 years ago by
Yingzi Zhang
▴ 90
1
vote
1
reply
1.5k
views
rMATS keeps running but no outputs nor any errors reported
rMATS
alternative splicing analysis
4.6 years ago by
Yingzi Zhang
▴ 90
1
vote
0
replies
1.5k
views
Answer:
A: rMATS keeps running but no outputs nor any errors reported
4.6 years ago by
Yingzi Zhang
▴ 90
2
votes
2
replies
1.3k
views
how to set R parameter in MergeBamAlignment in Picard
software error
updated 5.3 years ago by
chenshaobo0322
• 0 • written 6.1 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.5k
views
Comment:
C: what "Main genome assembly score" in the output file of BBMap mean when evaluati
5.7 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.5k
views
Comment:
C: what "Main genome assembly score" in the output file of BBMap mean when evaluati
5.7 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.4k
views
Comment:
C: Does ensembl biomart provide ortholog information incomplete?
5.7 years ago by
Yingzi Zhang
▴ 90
1
vote
3
replies
2.5k
views
what "Main genome assembly score" in the output file of BBMap mean when evaluating a genome's assembly quality
assembly
5.7 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
2.4k
views
Comment:
C: Does ensembl biomart provide ortholog information incomplete?
6.0 years ago by
Yingzi Zhang
▴ 90
5
votes
7
replies
2.4k
views
Does ensembl biomart provide ortholog information incomplete?
ensembl
updated 6.0 years ago by
Emily
24k • written 6.0 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
1.3k
views
GATK recalibrator aborted/ended without any summery report
GATK recalibrator error
6.0 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
1.3k
views
Comment:
C: how to set R parameter in MergeBamAlignment in Picard
6.1 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
4.6k
views
Comment:
C: what's the difference between picard MergeBamAlignment and samtools merge
6.1 years ago by
Yingzi Zhang
▴ 90
4
votes
2
replies
4.6k
views
what's the difference between picard MergeBamAlignment and samtools merge
software error
alignment
updated 6.1 years ago by
ForeverFly
▴ 20 • written 6.1 years ago by
Yingzi Zhang
▴ 90
2
votes
0
replies
3.5k
views
Comment:
C: how to set metrics file when using MarkDuplicates in Picard
6.1 years ago by
Yingzi Zhang
▴ 90
6
votes
2
replies
3.5k
views
how to set metrics file when using MarkDuplicates in Picard
software error
genome
picard
updated 6.1 years ago by
zx8754
12k • written 6.1 years ago by
Yingzi Zhang
▴ 90
0
votes
3
replies
1.3k
views
how to find the locations of protein products of a certain list of genes?
software error
updated 2.6 years ago by
Doralicia
• 0 • written 6.3 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
1.4k
views
Comment:
C: how to use regular expression to grasp information before "GO:" or "#N/A"
6.3 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
1.4k
views
Comment:
C: how to use regular expression to grasp information before "GO:" or "#N/A"
6.3 years ago by
Yingzi Zhang
▴ 90
2
votes
5
replies
1.4k
views
how to use regular expression to grasp information before "GO:" or "#N/A"
python
6.3 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
4.3k
views
Comment:
C: GATK: how to find and use GenomeAnalysisTK.jar under java
6.3 years ago by
Yingzi Zhang
▴ 90
3
votes
2
replies
4.3k
views
GATK: how to find and use GenomeAnalysisTK.jar under java
software error
updated 6.3 years ago by
GenoMax
147k • written 6.3 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.3k
views
Comment:
C: task killed during SOAPdenovo's running
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
2.3k
views
Comment:
C: task killed during SOAPdenovo's running
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
2.3k
views
Comment:
C: task killed during SOAPdenovo's running
6.4 years ago by
Yingzi Zhang
▴ 90
1
vote
8
replies
2.3k
views
task killed during SOAPdenovo's running
assembly
software error
SOAPdenovo
updated 6.4 years ago by
Ram
44k • written 6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.3k
views
Comment:
C: task killed during SOAPdenovo's running
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.1k
views
Comment:
C: set "avg_ins" when using SOAPdenovo
6.4 years ago by
Yingzi Zhang
▴ 90
1
vote
0
replies
1.8k
views
Comment:
C: still not clear about differences between de novo genome sequencing and genome r
6.4 years ago by
Yingzi Zhang
▴ 90
2
votes
2
replies
2.1k
views
set "avg_ins" when using SOAPdenovo
Assembly
updated 6.4 years ago by
GenoMax
147k • written 6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
1.8k
views
Comment:
C: still not clear about differences between de novo genome sequencing and genome r
6.4 years ago by
Yingzi Zhang
▴ 90
4
votes
4
replies
1.8k
views
still not clear about differences between de novo genome sequencing and genome reseqencing
assembly
sequencing
updated 6.4 years ago by
GenoMax
147k • written 6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
1.9k
views
Comment:
C: puzzled about "-kmer" options during de novo assembly
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
1.9k
views
Comment:
C: puzzled about "-kmer" options during de novo assembly
6.4 years ago by
Yingzi Zhang
▴ 90
3
votes
5
replies
1.9k
views
puzzled about "-kmer" options during de novo assembly
assembly
sequencing
updated 6.4 years ago by
lieven.sterck
15k • written 6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.9k
views
Comment:
C: segmentation fault (core dumped) when running unikalow
6.4 years ago by
Yingzi Zhang
▴ 90
1
vote
0
replies
2.9k
views
Comment:
C: segmentation fault (core dumped) when running unikalow
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
5.5k
views
Comment:
C: qualimap reported java.awt.AWTError: Can't connect to X11 window server
6.4 years ago by
Yingzi Zhang
▴ 90
5
votes
5
replies
5.5k
views
qualimap reported java.awt.AWTError: Can't connect to X11 window server
software error
updated 6.4 years ago by
GenoMax
147k • written 6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
2.9k
views
Comment:
C: segmentation fault (core dumped) when running unikalow
6.4 years ago by
Yingzi Zhang
▴ 90
5
votes
9
replies
2.9k
views
segmentation fault (core dumped) when running unikalow
assembly
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
2.9k
views
Comment:
C: segmentation fault (core dumped) when running unikalow
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
5.5k
views
Comment:
C: qualimap reported java.awt.AWTError: Can't connect to X11 window server
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.3k
views
Comment:
C: bam file sorted by "-n" was not accepted by qualimap
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.3k
views
Comment:
C: bam file sorted by "-n" was not accepted by qualimap
6.4 years ago by
Yingzi Zhang
▴ 90
4
votes
4
replies
2.3k
views
bam file sorted by "-n" was not accepted by qualimap
alignment
6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
1
reply
2.7k
views
Comment:
C: meet "not enough memory" problem during SOAPdenovo assembly
6.4 years ago by
Yingzi Zhang
▴ 90
3
votes
10
replies
2.7k
views
meet "not enough memory" problem during SOAPdenovo assembly
assembly
genome
updated 6.4 years ago by
Benn
8.3k • written 6.4 years ago by
Yingzi Zhang
▴ 90
0
votes
0
replies
2.7k
views
Comment:
C: meet "not enough memory" problem during SOAPdenovo assembly
6.4 years ago by
Yingzi Zhang
▴ 90
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