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comments
2
votes
4
replies
978
views
popbam: command not found
popbam
2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
830
views
Comment:
Comment: How to add the PO tag in BAM file
2.8 years ago by
taniamahmood38
▴ 60
1
vote
2
replies
830
views
How to add the PO tag in BAM file
PO_tag
BAM
POPBAM
2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
908
views
Comment:
Comment: How to add @RG tags in vcf file?
2.8 years ago by
taniamahmood38
▴ 60
1
vote
2
replies
908
views
How to add @RG tags in vcf file?
vcf
H_statistics
POPBAM
updated 2.8 years ago by
Pierre Lindenbaum
165k • written 2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
378
views
How to resolve IndexError: too many indices for array?
pool-HMM
python
pooled-seq
2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
413
views
-p argument in freebayes for pooled sample
freebayes
variant-calling
pool-seq
vcf
updated 15 months ago by
Ram
44k • written 2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
651
views
Comment:
Comment: Error in polymutt2 tool compilation
2.8 years ago by
taniamahmood38
▴ 60
0
votes
2
replies
651
views
Error in polymutt2 tool compilation
argument.h
vcf2map
polymutt2
2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
598
views
Comment:
Comment: Error: Could not open the input file
2.8 years ago by
taniamahmood38
▴ 60
1
vote
2
replies
598
views
Error: Could not open the input file
linux
samtools
pool-HMM
updated 19 months ago by
Ram
44k • written 2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.1k
views
Comment:
Comment: ImportError: cannot import name expm3
2.8 years ago by
taniamahmood38
▴ 60
1
vote
2
replies
1.1k
views
ImportError: cannot import name expm3
linuxOS
Pool-HMM
SciPy
python2
2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
341
views
Issue with .map file generated using Plink software
genetic_map
linuxOS
.map_file
Plink
2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
3.4k
views
Comment:
Comment: what do the bcftools ROH output "markers & quality" fields indicate ?
2.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.6k
views
Comment:
Comment: Plant de novo genome assembly of illumina reads on linux
2.9 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.6k
views
Comment:
Comment: Plant de novo genome assembly of illumina reads on linux
2.9 years ago by
taniamahmood38
▴ 60
2
votes
6
replies
1.6k
views
Plant de novo genome assembly of illumina reads on linux
de_novo_genome_assembly
linux
plant_illumina_data
2.9 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
919
views
Comment:
Comment: How to resolve the warning message in detectRUNS on R software
3.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.5k
views
ImportError: cannot import name 'ft2font' from partially initialized module 'matplotlib'
bcftools
matplotlib
roh
plot-roh.py
updated 19 months ago by
Ram
44k • written 3.0 years ago by
taniamahmood38
▴ 60
2
votes
2
replies
919
views
How to resolve the warning message in detectRUNS on R software
bcftools
detectRUNS
roh
R
updated 19 months ago by
Ram
44k • written 3.0 years ago by
taniamahmood38
▴ 60
0
votes
1
reply
2.2k
views
Comment:
Comment: How can I draw this plot?
3.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
2.2k
views
Comment:
Comment: How can I draw this plot?
3.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
434
views
How to make Genetic map file required by bcftools
bcftools
genetic-map
roh
updated 19 months ago by
Ram
44k • written 3.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
562
views
BCFtools roh analysis: Number of --estimate-AF samples: 0
bcftools
roh
AF
updated 19 months ago by
Ram
44k • written 3.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.4k
views
Comment:
Comment: libvcflib-tools error: Unable to correct problems, you have held broken packages
3.0 years ago by
taniamahmood38
▴ 60
0
votes
2
replies
1.4k
views
libvcflib-tools error: Unable to correct problems, you have held broken packages
vcflib
ubuntu20.04
libvcflib-tools
3.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.9k
views
Comment:
Comment: Selscan: ERROR: Alleles must be coded 0/1 only.
3.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.9k
views
Comment:
Comment: Selscan: ERROR: Alleles must be coded 0/1 only.
3.0 years ago by
taniamahmood38
▴ 60
2
votes
5
replies
1.9k
views
Selscan: ERROR: Alleles must be coded 0/1 only.
VCF
nsl
Selscan
3.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.3k
views
A USER ERROR has occurred: no positional argument is defined for this tool.
GATK4
HaplotypeCaller
BAM
updated 3.4 years ago by
Ram
44k • written 3.4 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
608
views
GEMINI (GEnome MINIng) inheritance pattern command warning no affecteds in family 0
ubuntu
GEnomeMINIng
gemini
3.8 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
2.1k
views
Comment:
C: Gemini Installation pybedtools version error
3.9 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.2k
views
Comment:
C: Script for XP-EHH, EHH and iHS tests and phasing vcf file that works on all chro
3.9 years ago by
taniamahmood38
▴ 60
1
vote
2
replies
1.2k
views
Script for XP-EHH, EHH and iHS tests and phasing vcf file that works on all chromosome concurrently
WGS
Pooled-Seq
XPEHH
EHH
iHS
3.9 years ago by
taniamahmood38
▴ 60
1
vote
0
replies
1.2k
views
Comment:
C: Number of upregulated and downregulated genes from counts matrix
3.9 years ago by
taniamahmood38
▴ 60
1
vote
2
replies
1.2k
views
Number of upregulated and downregulated genes from counts matrix
RNA-Seq
DEGs
up and downregulated genes
3.9 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
1.5k
views
Comment:
C: Converting a BAM/VCF into genetic recombination map tsv file
4.0 years ago by
taniamahmood38
▴ 60
0
votes
1
reply
1.5k
views
Comment:
C: Converting a BAM/VCF into genetic recombination map tsv file
4.0 years ago by
taniamahmood38
▴ 60
2
votes
4
replies
1.5k
views
Converting a BAM/VCF into genetic recombination map tsv file
.tsv file format
--GeneMap
SelScan
BAM/VCF
4.0 years ago by
taniamahmood38
▴ 60
10
votes
15
replies
2.8k
views
Convert BCF to BAM
BCF to BAM
Linux
Ubuntu terminal
Command line
updated 4.8 years ago by
rgsingleton
• 0 • written 5.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
905
views
Comment:
C: Split synchronized file
5.0 years ago by
taniamahmood38
▴ 60
1
vote
2
replies
905
views
Split synchronized file
sync file
popoolation2 tool
ubuntu
5.0 years ago by
taniamahmood38
▴ 60
0
votes
0
replies
2.8k
views
Comment:
C: Convert BCF to BAM
5.0 years ago by
taniamahmood38
▴ 60
0
votes
2
replies
2.8k
views
Comment:
C: Convert BCF to BAM
updated 5.0 years ago by
Pierre Lindenbaum
165k • written 5.0 years ago by
taniamahmood38
▴ 60
0
votes
1
reply
2.8k
views
Comment:
C: Convert BCF to BAM
5.0 years ago by
taniamahmood38
▴ 60
0
votes
1
reply
2.8k
views
Comment:
C: Convert BCF to BAM
5.0 years ago by
taniamahmood38
▴ 60
0
votes
1
reply
2.8k
views
Comment:
C: Convert BCF to BAM
5.0 years ago by
taniamahmood38
▴ 60
98 results • Page
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