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bcftools unable to tag poor variant calls properly
bcftools gatk vafator
updated 24 months ago by 45k • written 2.3 years ago by ▴ 940
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1
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3.9k
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Comment: Comment: Where is the documentation for PacBio tool bam2fastx?
2.3 years ago by rohitsatyam102 ▴ 940
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2.1k
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Comment: Comment: Tool to combine Germline Variant call from different variant callers
2.3 years ago by rohitsatyam102 ▴ 940
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0
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10k
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Comment: Comment: Picard Exception: Illegal Mate State
2.3 years ago by rohitsatyam102 ▴ 940
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1
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2.1k
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Comment: Comment: Tool to combine Germline Variant call from different variant callers
2.4 years ago by rohitsatyam102 ▴ 940
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3
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2.1k
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Tool to combine Germline Variant call from different variant callers
haplotypecaller gatk snps
2.3 years ago by rohitsatyam102 ▴ 940
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0
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16k
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Comment: Comment: How to filter/view reads mapped to multiple locations using samtools or pysam
2.4 years ago by rohitsatyam102 ▴ 940
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0
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554
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Queries regarding SARS-CoV2 GISAID Genomes Submission
wf-artic COVID GISAID
2.6 years ago by rohitsatyam102 ▴ 940
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0
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2.5k
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Comment: Comment: how to pass trimmed fastP output to bwa in Nextflow
2.6 years ago by rohitsatyam102 ▴ 940
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0
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2.5k
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Comment: Comment: how to pass trimmed fastP output to bwa in Nextflow
2.6 years ago by rohitsatyam102 ▴ 940
6
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5
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2.5k
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how to pass trimmed fastP output to bwa in Nextflow
fastp bwa nextflow
2.6 years ago by rohitsatyam102 ▴ 940
0
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1
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2.5k
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Comment: Comment: how to pass trimmed fastP output to bwa in Nextflow
2.6 years ago by rohitsatyam102 ▴ 940
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0
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3.1k
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Comment: Comment: bcl2fastq dumps most of the reads as undetermined
2.7 years ago by rohitsatyam102 ▴ 940
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0
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3.1k
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Comment: Comment: bcl2fastq dumps most of the reads as undetermined
2.7 years ago by rohitsatyam102 ▴ 940
0
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4
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2.1k
views
convert a list of plotly plots to an HTML output
ggplot2 bam plotly coverage
updated 2.7 years ago by 15k • written 2.7 years ago by ▴ 940
5
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4
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3.1k
views
bcl2fastq dumps most of the reads as undetermined
bcl2fastq
2.7 years ago by rohitsatyam102 ▴ 940
0
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1
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2.1k
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Comment: Comment: convert a list of plotly plots to an HTML output
2.7 years ago by rohitsatyam102 ▴ 940
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0
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4.6k
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Comment: Comment: reduce space between X-axis ticks
2.7 years ago by rohitsatyam102 ▴ 940
2
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6
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4.6k
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reduce space between X-axis ticks
R GSEA
2.7 years ago by rohitsatyam102 ▴ 940
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0
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4.6k
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Comment: Comment: reduce space between X-axis ticks
2.7 years ago by rohitsatyam102 ▴ 940
0
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1
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4.6k
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Comment: Comment: reduce space between X-axis ticks
2.7 years ago by rohitsatyam102 ▴ 940
1
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0
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1.4k
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Tutorial: Making LDA Score plot
LDA metagenomics
2.7 years ago by rohitsatyam102 ▴ 940
0
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1
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22k
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Comment: Comment: RNA-Seq analysis using STAR and Salmon
2.7 years ago by rohitsatyam102 ▴ 940
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0
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518
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Make parts of process run once and other parts as loop
nextflow sars nextclade covid
2.8 years ago by rohitsatyam102 ▴ 940
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0
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1.4k
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Comment: Comment: Nextflow printing help message even when params.help is false
2.8 years ago by rohitsatyam102 ▴ 940
6
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2
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1.4k
views
Nextflow printing help message even when params.help is false
nextflow align bwa alignment
2.8 years ago by rohitsatyam102 ▴ 940
0
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6
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2.1k
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Nextflow runs Successfully but output files are empty. How to debug?
nextflow bcftools
2.8 years ago by rohitsatyam102 ▴ 940
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0
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2.1k
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Answer: Answer: Nextflow runs Successfully but output files are empty. How to debug?
2.8 years ago by rohitsatyam102 ▴ 940
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0
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2.1k
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Comment: Comment: Nextflow runs Successfully but output files are empty. How to debug?
2.9 years ago by rohitsatyam102 ▴ 940
0
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1
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2.1k
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Comment: Comment: Nextflow runs Successfully but output files are empty. How to debug?
2.9 years ago by rohitsatyam102 ▴ 940
1
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1
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3.2k
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Comment: Comment: Fastqc in nextflow run only one pair of fastq.gz file and not on all Fastq files
2.9 years ago by rohitsatyam102 ▴ 940
3
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3
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3.2k
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Fastqc in nextflow run only one pair of fastq.gz file and not on all Fastq files
nextflow fastqc
updated 2.9 years ago by 88k • written 2.9 years ago by ▴ 940
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0
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2.8k
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Comment: Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
2.9 years ago by rohitsatyam102 ▴ 940
0
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0
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2.8k
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Comment: Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
2.9 years ago by rohitsatyam102 ▴ 940
3
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5
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2.8k
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Using shell command in Nextflow DSL=2 for BWA mem aligner
nextflow alihnment align bwa
2.9 years ago by rohitsatyam102 ▴ 940
0
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1
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2.8k
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Comment: Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
2.9 years ago by rohitsatyam102 ▴ 940
0
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1
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1.4k
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Comment: Comment: Online training - Introduction to Nextflow
2.9 years ago by rohitsatyam102 ▴ 940
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0
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4.6k
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Comment: Comment: Tutorial for analysing gpr files of microarray
2.9 years ago by rohitsatyam102 ▴ 940
3
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1
reply
866
views
GO Term Analysis in scRNASeq data with low number of genes expressed
scrnaseq Seurat
updated 2.9 years ago by ★ 2.0k • written 2.9 years ago by ▴ 940
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0
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3.7k
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Comment: Comment: Big difference in estimated duplicate reads between forward and reverse of paire
3.0 years ago by rohitsatyam102 ▴ 940
0
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1
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3.7k
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Comment: Comment: Big difference in estimated duplicate reads between forward and reverse of paire
3.0 years ago by rohitsatyam102 ▴ 940
0
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0
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2.2k
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Comment: Comment: How to use SingleR for annotating single-cell transcriptomics dataset with our o
3.2 years ago by rohitsatyam102 ▴ 940
0
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1
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3.7k
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Comment: Comment: How to select nFeature parameter of SelectIntegrationFeatures function in Seurat
3.2 years ago by rohitsatyam102 ▴ 940
5
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0
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3.7k
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Forum: Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat scrnaseq
3.2 years ago by rohitsatyam102 ▴ 940
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0
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9.9k
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Comment: Comment: SCTransform prior or after merging samples into one object?
3.2 years ago by rohitsatyam102 ▴ 940
0
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1
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16k
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Comment: Comment: FindAllMarkers pct1 and pct2
3.2 years ago by rohitsatyam102 ▴ 940
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1
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16k
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Comment: Comment: FindAllMarkers pct1 and pct2
3.2 years ago by rohitsatyam102 ▴ 940
0
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0
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3.9k
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Comment: Comment: Running fastq_screen on your data
3.2 years ago by rohitsatyam102 ▴ 940
4
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2
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3.9k
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Tutorial: Running fastq_screen on your data
fastqscreen
3.2 years ago by rohitsatyam102 ▴ 940
1
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0
replies
1.2k
views
Interpreting the Jackstraw plot of Seurat
genomics seurat plot scrnaseq
3.3 years ago by rohitsatyam102 ▴ 940
238 results • Page 2 of 5
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