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Subset Seurat object from Xenium spatial data
Seurat Xenium Spatial
updated 7 months ago by ★ 3.0k • written 7 months ago by ▴ 110
3
votes
9
replies
2.8k
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ChIP-Seq Analysis allele specific way?
ChIP-Seq ASE MACS2 VCF NGS
updated 4.2 years ago by ▴ 10 • written 5.9 years ago by ▴ 110
0
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1
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1.3k
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Does Nextera Transposase adapter sequence affects GATK HaplotypeCaller pipeline?
SNP GATK illumina RNA-Seq NGS
4.8 years ago by Susmita Mandal ▴ 110
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0
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4.4k
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Comment: C: Split BAM file from paired end read into forward and reverse strand w.r.t refere
4.8 years ago by Susmita Mandal ▴ 110
0
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1
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4.4k
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Comment: C: Split BAM file from paired end read into forward and reverse strand w.r.t refere
4.8 years ago by Susmita Mandal ▴ 110
0
votes
1
reply
4.4k
views
Comment: C: Split BAM file from paired end read into forward and reverse strand w.r.t refere
4.8 years ago by Susmita Mandal ▴ 110
0
votes
1
reply
4.4k
views
Comment: C: Split BAM file from paired end read into forward and reverse strand w.r.t refere
4.8 years ago by Susmita Mandal ▴ 110
0
votes
1
reply
4.4k
views
Comment: C: Split BAM file from paired end read into forward and reverse strand w.r.t refere
4.8 years ago by Susmita Mandal ▴ 110
0
votes
10
replies
4.4k
views
Split BAM file from paired end read into forward and reverse strand w.r.t reference genome
RNA-Seq NGS SNP Variant Calling samtools
updated 4.8 years ago by 85k • written 4.8 years ago by ▴ 110
0
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0
replies
30k
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Comment: C: SAM flags meaning
4.8 years ago by Susmita Mandal ▴ 110
0
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0
replies
578
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Tools and/or methods to detect allelic mapping bias.
RNA-Seq SNP variant calling ngs alelle specific
4.8 years ago by Susmita Mandal ▴ 110
0
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1
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1.4k
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Comment: C: Making pattern of GT:AD:DP:PL column values to be replaced by o and 1.
4.8 years ago by Susmita Mandal ▴ 110
1
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1
reply
2.8k
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Comment: C: ChIP-Seq Analysis allele specific way?
4.9 years ago by Susmita Mandal ▴ 110
0
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0
replies
2.0k
views
Comment: C: Splitting BAM file from paired end into forward and reverse strands?
4.9 years ago by Susmita Mandal ▴ 110
0
votes
2
replies
2.0k
views
Splitting BAM file from paired end into forward and reverse strands?
RNA-Seq samtools ngs rna-seq VCF
4.9 years ago by Susmita Mandal ▴ 110
0
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1
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8.9k
views
Comment: C: Tools For Analysis Allele Specific Expression In Rna-Seq Data?
5.0 years ago by Susmita Mandal ▴ 110
1
vote
1
reply
4.9k
views
Comment: C: Allele Specific Expression Analysis
5.0 years ago by Susmita Mandal ▴ 110
3
votes
10
replies
4.9k
views
Allele Specific Expression Analysis
SNP Allele specific RNA-Seq X chromosome STAR
updated 5.0 years ago by ▴ 350 • written 6.2 years ago by ▴ 110
0
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1
reply
3.2k
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Comment: C: scRNA-seq gene expression gradient onto tSNE plot
5.2 years ago by Susmita Mandal ▴ 110
0
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1
reply
3.1k
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Comment: C: STAR genome genrate taking long time and less thread.
5.3 years ago by Susmita Mandal ▴ 110
0
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0
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4.9k
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Comment: C: Allele Specific Expression Analysis
5.4 years ago by Susmita Mandal ▴ 110
1
vote
2
replies
1.5k
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Outliers in a boxplot: Necessary or not?
RNA-Seq Statistics R
5.4 years ago by Susmita Mandal ▴ 110
0
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0
replies
1.6k
views
Comment: C: Moving average plot of gene expression ratio along the chromosome length
5.5 years ago by Susmita Mandal ▴ 110
0
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1
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1.6k
views
Comment: C: Moving average plot of gene expression ratio along the chromosome length
5.5 years ago by Susmita Mandal ▴ 110
0
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4
replies
1.6k
views
Moving average plot of gene expression ratio along the chromosome length
RNA-Seq R Bioconductor gene next-gen
5.5 years ago by Susmita Mandal ▴ 110
0
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0
replies
3.8k
views
Comment: C: Convert RefseqID to EntrezID
5.5 years ago by Susmita Mandal ▴ 110
0
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1
reply
3.8k
views
Comment: A: Convert RefseqID to EntrezID
5.5 years ago by Susmita Mandal ▴ 110
1
vote
0
replies
1.1k
views
Comment: C: Getting only Indels and no SNPs after variant calling variant calling using Hapl
5.5 years ago by Susmita Mandal ▴ 110
1
vote
1
reply
1.9k
views
Comment: C: Allele specific expression analysis using human cell line
5.5 years ago by Susmita Mandal ▴ 110
0
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1
reply
1.1k
views
Comment: C: Getting only Indels and no SNPs after variant calling variant calling using Hapl
5.5 years ago by Susmita Mandal ▴ 110
3
votes
4
replies
1.1k
views
Getting only Indels and no SNPs after variant calling variant calling using HaplotypeCaller
RNA-Seq BAM SNP GATK Variant Calling
5.5 years ago by Susmita Mandal ▴ 110
1
vote
0
replies
944
views
Is it advisable to do allele specific expression analysis on single cell RNA-Seq data?
RNA-Seq Single-cell NGS ASE SNP
updated 5.7 years ago by 20 • written 5.7 years ago by ▴ 110
0
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1
reply
1.9k
views
Comment: C: Allele specific expression analysis using human cell line
5.7 years ago by Susmita Mandal ▴ 110
0
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1
reply
1.9k
views
Comment: C: Allele specific expression analysis using human cell line
5.7 years ago by Susmita Mandal ▴ 110
0
votes
1
reply
1.9k
views
Comment: C: Allele specific expression analysis using human cell line
5.7 years ago by Susmita Mandal ▴ 110
0
votes
1
reply
1.9k
views
Comment: C: Allele specific expression analysis using human cell line
5.7 years ago by Susmita Mandal ▴ 110
4
votes
12
replies
1.9k
views
Allele specific expression analysis using human cell line
RNA-Seq ASE NGS SNP Affimetrix
updated 5.7 years ago by ▴ 170 • written 5.8 years ago by ▴ 110
0
votes
1
reply
7.1k
views
Comment: C: Converting Microarray SNP data into VCF format
5.7 years ago by Susmita Mandal ▴ 110
0
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1
reply
7.1k
views
Comment: C: Converting Microarray SNP data into VCF format
5.8 years ago by Susmita Mandal ▴ 110
0
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2
replies
7.1k
views
Comment: C: Converting Microarray SNP data into VCF format
5.8 years ago by Susmita Mandal ▴ 110
0
votes
0
replies
746
views
Genome Annotations? RepeatMasker class/family? Regulation?
RNA-Seq RepeatMasker Annotation NGS
5.8 years ago by Susmita Mandal ▴ 110
0
votes
2
replies
2.2k
views
ChIP-Seq density plot of the TSS regions?
ChIP-Seq Deeptools Bedtools IGV ASE
updated 5.8 years ago by 20k • written 5.8 years ago by ▴ 110
2
votes
2
replies
11k
views
How to include genes having negative fold change in the log2 FC plot?
RNA-Seq log2 NGS fold change ASE
updated 5.8 years ago by 14k • written 5.8 years ago by ▴ 110
0
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0
replies
2.8k
views
Comment: C: ChIP-Seq Analysis allele specific way?
5.9 years ago by Susmita Mandal ▴ 110
0
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1
reply
2.8k
views
Comment: C: ChIP-Seq Analysis allele specific way?
5.9 years ago by Susmita Mandal ▴ 110
10
votes
13
replies
12k
views
8 follow
What is RPKM/FPKM > 1 or 3 or 5?
RNA-Seq rpkm fpkm normalization ngs
updated 2.6 years ago by ▴ 10 • written 5.9 years ago by ▴ 110
0
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1
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12k
views
Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
5.9 years ago by Susmita Mandal ▴ 110
0
votes
1
reply
12k
views
Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
5.9 years ago by Susmita Mandal ▴ 110
0
votes
2
replies
12k
views
Comment: C: What is RPKM/FPKM > 1 or 3 or 5?
5.9 years ago by Susmita Mandal ▴ 110
0
votes
1
reply
7.1k
views
Comment: C: Converting Microarray SNP data into VCF format
5.9 years ago by Susmita Mandal ▴ 110
73 results • Page 1 of 2
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