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Tutorial: Gene Set Enrichment Analysis
microarray enrichment RNA-Seq GSEA
updated 7 months ago by • 0 • written 4.1 years ago by 3.3k
1
vote
0
replies
487
views
Answer: Answer: naming the UMAP cluster
7 months ago by Hamid Ghaedi 3.3k
1
vote
1
reply
18k
views
Comment: Comment: Methylation Analysis Tutorial in R - Part 1
8 months ago by Hamid Ghaedi 3.3k
47
votes
13
replies
18k
views
13 follow
Tutorial: Methylation Analysis Tutorial in R - Part 1
R cancer methylation
updated 8 months ago by • 0 • written 4.2 years ago by 3.3k
16
votes
3
replies
5.0k
views
Tutorial: Methylation Analysis Tutorial in R_part2
cancer methylation RNA-Seq R
updated 3.7 years ago by • 0 • written 4.2 years ago by 3.3k
0
votes
0
replies
18k
views
Comment: Comment: Methylation Analysis Tutorial in R_part1
11 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.0k
views
Comment: Comment: GEO dataset extraction
14 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.9k
views
Comment: Comment: How to convert Seurat object to sce object retaining the HVG
14 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
925
views
Comment: Comment: RNAseq gene clustering. Silhouette results generation from the NMF consensus mem
15 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
6.8k
views
Comment: Comment: Unsupervised clustering on gene expression data
15 months ago by Hamid Ghaedi 3.3k
10
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4
replies
6.8k
views
Tutorial: Unsupervised clustering on gene expression data
gene-expression clustering RNA-seq
15 months ago by Hamid Ghaedi 3.3k
1
vote
0
replies
1.7k
views
Answer: Answer: How to filter gene counts by keeps genes that have a gene count of of 10 or more
16 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
771
views
Answer: Answer: Seurat clustering and classification
16 months ago by Hamid Ghaedi 3.3k
1
vote
1
reply
1.5k
views
Answer: Answer: interpreting results from pathway analysis
16 months ago by Hamid Ghaedi 3.3k
1
vote
0
replies
733
views
Answer: Answer: TXT or IDAT format for differential DNA Methylation analysis
16 months ago by Hamid Ghaedi 3.3k
4
votes
0
replies
886
views
Answer: Answer: scRNAseq error source a custom function
16 months ago by Hamid Ghaedi 3.3k
0
votes
1
reply
902
views
Comment: Comment: Where to get the molecular subtype information of STAD sample in TCGA
18 months ago by Hamid Ghaedi 3.3k
1
vote
0
replies
1.3k
views
Answer: Answer: integrate single cell RNA sequencing data
18 months ago by Hamid Ghaedi 3.3k
2
votes
0
replies
537
views
Comment: Comment: 'Seurat' package
18 months ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.5k
views
Comment: Comment: Change a dataset of variants into binary form?
22 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
753
views
Comment: Comment: Genes With List of Go terms
22 months ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.5k
views
Answer: Answer: Change a dataset of variants into binary form?
22 months ago by Hamid Ghaedi 3.3k
1
vote
0
replies
651
views
Comment: Comment: Which software should I use to perform Gene Enrichment Analysis for miRNA target
23 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
958
views
Answer: Answer: Advice needed on survival analysis using TCGA
23 months ago by Hamid Ghaedi 3.3k
3
votes
1
reply
2.1k
views
Answer: Answer: UniProt ID, genes
24 months ago by Hamid Ghaedi 3.3k
1
vote
1
reply
1.1k
views
Comment: Comment: Survival analysis based on gene signature
24 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
611
views
Comment: Comment: Does a TCGA dataset need batch effect removal?
2.0 years ago by Hamid Ghaedi 3.3k
1
vote
1
reply
1.1k
views
Comment: Comment: Creating Seurat Object from DropViz metacells and annotations?
2.1 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
4.4k
views
Comment: Comment: need some help on how to use DESeq2 for TCGA data
2.1 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
4.4k
views
Comment: Comment: need some help on how to use DESeq2 for TCGA data
2.1 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
6.8k
views
Comment: Comment: Unsupervised clustering on gene expression data
2.2 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
533
views
Comment: Comment: How to interate over folder and use as input for program running in Rstudio.
2.2 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
746
views
Comment: Comment: Best way to make a PCA plot integrating in-house data with public data?
2.3 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.0k
views
Comment: Comment: How to separate combined values?
2.3 years ago by Hamid Ghaedi 3.3k
1
vote
1
reply
1.1k
views
Answer: Answer: Picking up differences in mutation sets
2.3 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
3.7k
views
Comment: Comment: Where can I find the reference files for the 1000 Genome project VCF data?
2.3 years ago by Hamid Ghaedi 3.3k
2
votes
1
reply
18k
views
Comment: Comment: Methylation Analysis Tutorial in R_part1
24 months ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.0k
views
Comment: Comment: Suggestion of Cancer Databases
2.4 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.6k
views
Comment: Comment: PATHWAY ENRICHMENT
2.5 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
734
views
Comment: Comment: DMD gene/genome/exome sequencing data publicly avalaible
2.5 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.0k
views
Comment: Comment: Find top genes that correlate with my gene of interest using TCGA RNA-Seq data a
2.5 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.0k
views
Comment: Comment: Find top genes that correlate with my gene of interest using TCGA RNA-Seq data a
2.5 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
2.0k
views
Comment: Comment: Getting access to files deposited to European Genome-phenome Archive (EGA)
2.5 years ago by Hamid Ghaedi 3.3k
1
vote
3
replies
2.0k
views
Getting access to files deposited to European Genome-phenome Archive (EGA)
EGA EBI
2.5 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
2.0k
views
Answer: Answer: Getting access to files deposited to European Genome-phenome Archive (EGA)
2.5 years ago by Hamid Ghaedi 3.3k
2
votes
1
reply
845
views
Comment: Comment: RT-PCR primer design
2.5 years ago by Hamid Ghaedi 3.3k
0
votes
0
replies
1.2k
views
Comment: Comment: SRR sample ID
2.5 years ago by Hamid Ghaedi 3.3k
0
votes
1
reply
1.2k
views
Comment: Comment: SRR sample ID
2.5 years ago by Hamid Ghaedi 3.3k
1
vote
0
replies
1.8k
views
Comment: Comment: Correlating DNA methylation beta values with Gene expression levels (RNA-seq)
2.5 years ago by Hamid Ghaedi 3.3k
2
votes
0
replies
2.0k
views
Answer: Answer: For loop in R
2.5 years ago by Hamid Ghaedi 3.3k
233 results • Page 1 of 5
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