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87
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Tutorial: Gene Set Enrichment Analysis
microarray enrichment RNA-Seq GSEA
updated 4 weeks ago by • 0 • written 3.6 years ago by 3.2k
1
vote
0
replies
196
views
Answer: Answer: naming the UMAP cluster
6 weeks ago by Hamid Ghaedi 3.2k
1
vote
1
reply
15k
views
Comment: Comment: Methylation Analysis Tutorial in R - Part 1
10 weeks ago by Hamid Ghaedi 3.2k
46
votes
13
replies
15k
views
13 follow
Tutorial: Methylation Analysis Tutorial in R - Part 1
R cancer methylation
updated 9 weeks ago by • 0 • written 3.6 years ago by 3.2k
16
votes
3
replies
4.4k
views
Tutorial: Methylation Analysis Tutorial in R_part2
cancer methylation RNA-Seq R
updated 3.2 years ago by • 0 • written 3.6 years ago by 3.2k
0
votes
0
replies
15k
views
Comment: Comment: Methylation Analysis Tutorial in R_part1
5 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
761
views
Comment: Comment: GEO dataset extraction
8 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
1.6k
views
Comment: Comment: How to convert Seurat object to sce object retaining the HVG
8 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
803
views
Comment: Comment: RNAseq gene clustering. Silhouette results generation from the NMF consensus mem
8 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
5.7k
views
Comment: Comment: Unsupervised clustering on gene expression data
9 months ago by Hamid Ghaedi 3.2k
10
votes
4
replies
5.7k
views
Tutorial: Unsupervised clustering on gene expression data
gene-expression clustering RNA-seq
9 months ago by Hamid Ghaedi 3.2k
1
vote
0
replies
1.3k
views
Answer: Answer: How to filter gene counts by keeps genes that have a gene count of of 10 or more
10 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
606
views
Answer: Answer: Seurat clustering and classification
10 months ago by Hamid Ghaedi 3.2k
1
vote
1
reply
1.2k
views
Answer: Answer: interpreting results from pathway analysis
10 months ago by Hamid Ghaedi 3.2k
1
vote
0
replies
565
views
Answer: Answer: TXT or IDAT format for differential DNA Methylation analysis
10 months ago by Hamid Ghaedi 3.2k
4
votes
0
replies
675
views
Answer: Answer: scRNAseq error source a custom function
10 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
722
views
Comment: Comment: Where to get the molecular subtype information of STAD sample in TCGA
11 months ago by Hamid Ghaedi 3.2k
1
vote
0
replies
964
views
Answer: Answer: integrate single cell RNA sequencing data
11 months ago by Hamid Ghaedi 3.2k
2
votes
0
replies
430
views
Comment: Comment: 'Seurat' package
12 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
1.3k
views
Comment: Comment: Change a dataset of variants into binary form?
16 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
647
views
Comment: Comment: Genes With List of Go terms
16 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
1.3k
views
Answer: Answer: Change a dataset of variants into binary form?
16 months ago by Hamid Ghaedi 3.2k
1
vote
0
replies
542
views
Comment: Comment: Which software should I use to perform Gene Enrichment Analysis for miRNA target
17 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
748
views
Answer: Answer: Advice needed on survival analysis using TCGA
17 months ago by Hamid Ghaedi 3.2k
3
votes
1
reply
1.7k
views
Answer: Answer: UniProt ID, genes
17 months ago by Hamid Ghaedi 3.2k
1
vote
1
reply
917
views
Comment: Comment: Survival analysis based on gene signature
17 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
510
views
Comment: Comment: Does a TCGA dataset need batch effect removal?
18 months ago by Hamid Ghaedi 3.2k
1
vote
1
reply
906
views
Comment: Comment: Creating Seurat Object from DropViz metacells and annotations?
18 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
3.7k
views
Comment: Comment: need some help on how to use DESeq2 for TCGA data
18 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
3.7k
views
Comment: Comment: need some help on how to use DESeq2 for TCGA data
18 months ago by Hamid Ghaedi 3.2k
1
vote
0
replies
5.7k
views
Comment: Comment: Unsupervised clustering on gene expression data
20 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
440
views
Comment: Comment: How to interate over folder and use as input for program running in Rstudio.
20 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
599
views
Comment: Comment: Best way to make a PCA plot integrating in-house data with public data?
21 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
837
views
Comment: Comment: How to separate combined values?
21 months ago by Hamid Ghaedi 3.2k
1
vote
1
reply
843
views
Answer: Answer: Picking up differences in mutation sets
21 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
3.4k
views
Comment: Comment: Where can I find the reference files for the 1000 Genome project VCF data?
21 months ago by Hamid Ghaedi 3.2k
2
votes
1
reply
15k
views
Comment: Comment: Methylation Analysis Tutorial in R_part1
17 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
869
views
Comment: Comment: Suggestion of Cancer Databases
23 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
1.4k
views
Comment: Comment: PATHWAY ENRICHMENT
23 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
629
views
Comment: Comment: DMD gene/genome/exome sequencing data publicly avalaible
23 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
879
views
Comment: Comment: Find top genes that correlate with my gene of interest using TCGA RNA-Seq data a
23 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
879
views
Comment: Comment: Find top genes that correlate with my gene of interest using TCGA RNA-Seq data a
23 months ago by Hamid Ghaedi 3.2k
1
vote
0
replies
1.7k
views
Comment: Comment: Getting access to files deposited to European Genome-phenome Archive (EGA)
23 months ago by Hamid Ghaedi 3.2k
1
vote
3
replies
1.7k
views
Getting access to files deposited to European Genome-phenome Archive (EGA)
EGA EBI
23 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
1.7k
views
Answer: Answer: Getting access to files deposited to European Genome-phenome Archive (EGA)
23 months ago by Hamid Ghaedi 3.2k
2
votes
1
reply
689
views
Comment: Comment: RT-PCR primer design
23 months ago by Hamid Ghaedi 3.2k
0
votes
0
replies
986
views
Comment: Comment: SRR sample ID
24 months ago by Hamid Ghaedi 3.2k
0
votes
1
reply
986
views
Comment: Comment: SRR sample ID
24 months ago by Hamid Ghaedi 3.2k
1
vote
0
replies
1.4k
views
Comment: Comment: Correlating DNA methylation beta values with Gene expression levels (RNA-seq)
2.0 years ago by Hamid Ghaedi 3.2k
2
votes
0
replies
1.6k
views
Answer: Answer: For loop in R
2.0 years ago by Hamid Ghaedi 3.2k
233 results • Page 1 of 5
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