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0
votes
1
reply
726
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constructing a reference matrix from affy 2.0 chip for a 4.0 chip.
affy
miRNA
Affymetrix Multispecies miRNA-1 Array
4.6 years ago by
RNAseqer
▴ 280
1
vote
0
replies
2.3k
views
Comment:
C: affy Transcriptome Analysis Console (TAC), export expression matrix?
4.7 years ago by
RNAseqer
▴ 280
3
votes
2
replies
2.3k
views
affy Transcriptome Analysis Console (TAC), export expression matrix?
affy
TAC
expression matrix
4.7 years ago by
RNAseqer
▴ 280
1
vote
2
replies
817
views
Small number of genes, drop in sft fit curve at higher threshold powers. why?
sft
wgcna
scale-free
updated 4.7 years ago by
Kevin Blighe
88k • written 4.7 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.2k
views
Comment:
C: Excel: using quartiles & averageifs to combine probe values without outliers
4.8 years ago by
RNAseqer
▴ 280
2
votes
1
reply
1.2k
views
Answer:
C: Excel: using quartiles & averageifs to combine probe values without outliers
4.8 years ago by
RNAseqer
▴ 280
3
votes
3
replies
1.2k
views
Excel: using quartiles & averageifs to combine probe values without outliers
excel
outliers
quartile
averageifs
matching
updated 4.8 years ago by
swbarnes2
14k • written 4.8 years ago by
RNAseqer
▴ 280
1
vote
0
replies
1.7k
views
Comment:
C: A good place to get immune cell deconvolution reference datasets?
4.9 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.7k
views
Comment:
C: A good place to get immune cell deconvolution reference datasets?
4.9 years ago by
RNAseqer
▴ 280
4
votes
4
replies
1.7k
views
A good place to get immune cell deconvolution reference datasets?
deconvolution
reference datasets
updated 4.9 years ago by
jared.andrews07
★ 18k • written 4.9 years ago by
RNAseqer
▴ 280
3
votes
3
replies
1.8k
views
Correlating WGCNA modules to Diseased/Not-Diseased Trait
WGCNA
Modules
Traits
updated 5.3 years ago by
andres.firrincieli
3.8k • written 5.3 years ago by
RNAseqer
▴ 280
0
votes
1
reply
1.1k
views
extracting a subset of probes from an expression object
subset
probes
microarray
exprs
updated 5.4 years ago by
Biostar
20 • written 5.6 years ago by
RNAseqer
▴ 280
1
vote
1
reply
5.7k
views
how to adjust for continuous covariates in limma?
limma
continuous covariates
DE
updated 5.5 years ago by
i.sudbery
20k • written 5.5 years ago by
RNAseqer
▴ 280
0
votes
0
replies
636
views
summarized probes with expresso. how do i get transcript IDs?
affy
expresso
transcript ID
5.5 years ago by
RNAseqer
▴ 280
0
votes
0
replies
974
views
is there an function to summarize miRNA array probes but do nothing else?
summarise probes
affy
miRNA
5.5 years ago by
RNAseqer
▴ 280
0
votes
0
replies
2.4k
views
Comment:
C: changing feature names (row names) for expressionset object?
5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
2.4k
views
Comment:
C: changing feature names (row names) for expressionset object?
5.6 years ago by
RNAseqer
▴ 280
2
votes
5
replies
2.4k
views
changing feature names (row names) for expressionset object?
expressionset
limma
rownames
5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
948
views
whats is the best normalization technique for miRNA microarray data?
normalization
miRNA
microarray
5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
6.4k
views
Comment:
C: How to in R: Include principal components as covariates in analysis
5.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
3.2k
views
Comment:
C: pData function not found. substitute? "An end to end workflow for differential g
5.6 years ago by
RNAseqer
▴ 280
6
votes
4
replies
3.2k
views
pData function not found. substitute? "An end to end workflow for differential gene expression using Affymetrix microarrays"
pvca
bioconductor
sva
pData
R
updated 5.6 years ago by
zx8754
12k • written 5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.7k
views
making limma design matrix with covariates, a strange labelling issue?
limma
design matrix
labels
columns
5.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
6.4k
views
Comment:
C: How to in R: Include principal components as covariates in analysis
5.6 years ago by
RNAseqer
▴ 280
1
vote
5
replies
6.4k
views
How to in R: Include principal components as covariates in analysis
pca
covariates
principal components
updated 5.6 years ago by
Kevin Blighe
88k • written 5.6 years ago by
RNAseqer
▴ 280
3
votes
1
reply
755
views
batchCombat package for R?
batchCombat
R
updated 5.6 years ago by
ATpoint
86k • written 5.6 years ago by
RNAseqer
▴ 280
3
votes
3
replies
2.8k
views
Principal component analysis of SVA's surrogate variables
sva
stdev
surrogate variables
updated 5.6 years ago by
GouthamAtla
12k • written 5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
2.8k
views
Comment:
C: Principal component analysis of SVA's surrogate variables
5.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
1.8k
views
contrast matrix design question, limma-sva
contrast matrix
sva
limma
5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.1k
views
sva pprob.b all 0s?
sva
microarray
r
pprob.b
5.6 years ago by
RNAseqer
▴ 280
1
vote
0
replies
16k
views
Comment:
C: Setting a threshold for FDR correction
5.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
updated 5.6 years ago by
h.mon
35k • written 5.6 years ago by
RNAseqer
▴ 280
1
vote
0
replies
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
2
replies
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
0
replies
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
2
replies
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
0
votes
1
reply
5.0k
views
Comment:
C: No significant DEG: A request to double check my commands for limma.
5.6 years ago by
RNAseqer
▴ 280
11
votes
22
replies
5.0k
views
No significant DEG: A request to double check my commands for limma.
limma
differential-gene-expression
updated 8 months ago by
Ram
44k • written 5.7 years ago by
RNAseqer
▴ 280
1
vote
0
replies
8.1k
views
Comment:
C: how do you remove the trace in heatmap.2 in R?
5.7 years ago by
RNAseqer
▴ 280
7
votes
3
replies
8.1k
views
how do you remove the trace in heatmap.2 in R?
heatmap.2
r
microarray
heat map
updated 5.7 years ago by
Kevin Blighe
88k • written 5.7 years ago by
RNAseqer
▴ 280
1
vote
0
replies
1.4k
views
Comment:
C: limma, best practices review paper?
5.7 years ago by
RNAseqer
▴ 280
2
votes
2
replies
1.4k
views
limma, best practices review paper?
R
limma
microarray
updated 5.7 years ago by
Kevin Blighe
88k • written 5.7 years ago by
RNAseqer
▴ 280
1
vote
0
replies
9.9k
views
Comment:
C: pulling snps from vcf file using ids
5.7 years ago by
RNAseqer
▴ 280
0
votes
0
replies
2.6k
views
Comment:
C: No Sensitivity/Accuracy output from gffcompare, what am I doing wrong?
5.7 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.0k
views
Comment:
C: minimum snp number from set in LD
5.7 years ago by
RNAseqer
▴ 280
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