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1.0k
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minimum snp number from set in LD
snps
ld
minimum snp number
updated 5.7 years ago by
MatthewP
★ 1.4k • written 5.7 years ago by
RNAseqer
▴ 280
15
votes
2
replies
9.9k
views
pulling snps from vcf file using ids
vcf
ids
snps
updated 5.7 years ago by
Kevin Blighe
88k • written 5.7 years ago by
RNAseqer
▴ 280
1
vote
1
reply
2.0k
views
Default Plink Window size?
plink
window
SNP
updated 5.7 years ago by
Kevin Blighe
88k • written 5.7 years ago by
RNAseqer
▴ 280
0
votes
0
replies
3.1k
views
Comment:
C: Interpreting plink snp tagging output
5.7 years ago by
RNAseqer
▴ 280
0
votes
1
reply
3.1k
views
Comment:
C: Interpreting plink snp tagging output
5.7 years ago by
RNAseqer
▴ 280
2
votes
3
replies
1.9k
views
Plink recode option to get genomic position?
plink
SNP
locus
updated 5.7 years ago by
zx8754
12k • written 5.7 years ago by
RNAseqer
▴ 280
0
votes
0
replies
1.9k
views
Comment:
C: Plink recode option to get genomic position?
5.7 years ago by
RNAseqer
▴ 280
0
votes
1
reply
3.1k
views
Comment:
C: Interpreting plink snp tagging output
5.7 years ago by
RNAseqer
▴ 280
0
votes
1
reply
3.1k
views
Comment:
C: Interpreting plink snp tagging output
5.7 years ago by
RNAseqer
▴ 280
0
votes
1
reply
3.1k
views
Comment:
C: Interpreting plink snp tagging output
5.7 years ago by
RNAseqer
▴ 280
8
votes
10
replies
3.1k
views
Interpreting plink snp tagging output
plink
SNP
updated 5.7 years ago by
chrchang523
11k • written 5.7 years ago by
RNAseqer
▴ 280
0
votes
0
replies
5.7k
views
Comment:
C: Filtering SNPS by minimum LD value in bcftools?
5.8 years ago by
RNAseqer
▴ 280
3
votes
2
replies
5.7k
views
Filtering SNPS by minimum LD value in bcftools?
bcftools
vcftools
vcf
LD
r2
5.8 years ago by
RNAseqer
▴ 280
1
vote
0
replies
5.5k
views
Comment:
C: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
5.8 years ago by
RNAseqer
▴ 280
12
votes
5
replies
5.5k
views
rowVars function, used in ballgown analysis not available for R 3.5.2, alternatives?
R
rna-seq
ballgown
rowVars
updated 5.8 years ago by
Kristoffer Vitting-Seerup
★ 4.1k • written 5.8 years ago by
RNAseqer
▴ 280
0
votes
1
reply
5.5k
views
Comment:
C: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
5.8 years ago by
RNAseqer
▴ 280
0
votes
0
replies
2.9k
views
Comment:
C: ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls
5.8 years ago by
RNAseqer
▴ 280
0
votes
1
reply
2.9k
views
Comment:
C: ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls
5.8 years ago by
RNAseqer
▴ 280
0
votes
4
replies
2.9k
views
ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls: ballgown -> read.table -> file
ballgown
RNA-Seq
stringtie
5.8 years ago by
RNAseqer
▴ 280
0
votes
2
replies
2.6k
views
No Sensitivity/Accuracy output from gffcompare, what am I doing wrong?
gffcompare
.stats.
accuracy
precision
5.8 years ago by
RNAseqer
▴ 280
1
vote
1
reply
1.6k
views
Can HISAT2 be invoked in bash shell, and can it be fed variables or names with wildcards as inputs?
Bash
Shell
HISAT2
updated 19 months ago by
Ram
44k • written 5.9 years ago by
RNAseqer
▴ 280
0
votes
0
replies
2.9k
views
Comment:
C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
5.9 years ago by
RNAseqer
▴ 280
0
votes
0
replies
2.9k
views
Comment:
C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
5.9 years ago by
RNAseqer
▴ 280
0
votes
0
replies
6.2k
views
Comment:
C: how to get Homo_sapiens.GRCh38.84.bed file
5.9 years ago by
RNAseqer
▴ 280
2
votes
7
replies
2.9k
views
samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. ValueError: file has no sequences defined (mode='rb')
samtools
bam
RSeQC
bam_stats.py
(mode='rb')
updated 5.9 years ago by
WouterDeCoster
47k • written 5.9 years ago by
RNAseqer
▴ 280
0
votes
1
reply
2.9k
views
Comment:
C: samtools sam-to-bam conversion => bamfile RSeQC tool bam_stats.py cannot use. Va
5.9 years ago by
RNAseqer
▴ 280
0
votes
1
reply
6.2k
views
Comment:
C: how to get Homo_sapiens.GRCh38.84.bed file
5.9 years ago by
RNAseqer
▴ 280
0
votes
0
replies
3.3k
views
Comment:
C: Hisat2 -Can it align paired readfiles, and unpaired read files leftover from tri
5.9 years ago by
RNAseqer
▴ 280
0
votes
0
replies
3.3k
views
Comment:
C: Hisat2 -Can it align paired readfiles, and unpaired read files leftover from tri
5.9 years ago by
RNAseqer
▴ 280
0
votes
4
replies
3.3k
views
Hisat2 -Can it align paired readfiles, and unpaired read files leftover from trimming/QC simultaneously?
rna-seq
alignment
HISAT2
Paired end
updated 5.9 years ago by
h.mon
35k • written 5.9 years ago by
RNAseqer
▴ 280
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