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9.1k
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Comment:
Comment: Fastqc To Check The Quality Of High Throughput Sequence
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
Ryan Dale
5.0k
0
votes
1
reply
5.1k
views
Comment:
Comment: On the utility of publishing a tool paper
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
Ryan Dale
5.0k
0
votes
0
replies
5.0k
views
Comment:
Comment: average coverage, chip-seq
updated 3.9 years ago by
Ram
44k • written 10.2 years ago by
Ryan Dale
5.0k
2
votes
2
replies
2.5k
views
Answer:
Answer: MACS usage for IgG and treatment
updated 3.0 years ago by
Ram
44k • written 10.2 years ago by
Ryan Dale
5.0k
1
vote
0
replies
9.8k
views
Comment:
C: Association between bed files - statistical significance
10.3 years ago by
Ryan Dale
5.0k
1
vote
1
reply
5.0k
views
Answer:
Answer: average coverage, chip-seq
updated 3.9 years ago by
Ram
44k • written 10.3 years ago by
Ryan Dale
5.0k
2
votes
1
reply
18k
views
Comment:
Comment: Workflow management software for pipeline development in NGS
updated 3.1 years ago by
Ram
44k • written 10.3 years ago by
Ryan Dale
5.0k
0
votes
0
replies
2.2k
views
Answer:
Answer: Comparisons between datasets generated at different timepoints
updated 3.9 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
4
votes
1
reply
8.9k
views
Answer:
Answer: pybedtools.BedTool.intersect not working, install problem
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
0
votes
1
reply
9.5k
views
Comment:
Comment: To What Degree Could We Determine Whether A Gene Is Expressed?
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
0
votes
0
replies
16k
views
Comment:
Comment: ChIP-Seq: Calling peaks with replicates
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
0
votes
0
replies
16k
views
Comment:
Comment: ChIP-Seq: Calling peaks with replicates
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
1
vote
1
reply
3.3k
views
Answer:
Answer: Pangenome visualization: flowerplot?
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
0
votes
0
replies
3.3k
views
Comment:
C: Pangenome visualization: flowerplot?
10.4 years ago by
Ryan Dale
5.0k
0
votes
1
reply
16k
views
Comment:
Comment: ChIP-Seq: Calling peaks with replicates
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
4
votes
1
reply
16k
views
Answer:
Answer: ChIP-Seq: Calling peaks with replicates
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
7
votes
1
reply
5.8k
views
Answer:
Answer: How to create Correlation plots between wig files
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
0
votes
0
replies
10.0k
views
Comment:
C: bigwig : peak distance from specific genomic region
10.4 years ago by
Ryan Dale
5.0k
3
votes
0
replies
3.1k
views
Answer:
Answer: What is a good ChIPseq peak distance cutoff?
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
1
vote
0
replies
3.5k
views
Comment:
Comment: ChIP-Seq duplicates metrics/qa
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
1
vote
1
reply
3.5k
views
Answer:
Answer: ChIP-Seq duplicates metrics/qa
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
2
votes
0
replies
2.6k
views
Answer:
Answer: Creatig TrackHubs from BigWigs
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
Ryan Dale
5.0k
1
vote
0
replies
14k
views
Comment:
C: Parsing Rna Secondary Structure Annotations?
10.5 years ago by
Ryan Dale
5.0k
0
votes
0
replies
15k
views
Comment:
Comment: Plotting Reads Around Tss
updated 3.2 years ago by
Ram
44k • written 10.5 years ago by
Ryan Dale
5.0k
1
vote
1
reply
15k
views
Comment:
Comment: Plotting Reads Around Tss
updated 3.2 years ago by
Ram
44k • written 10.5 years ago by
Ryan Dale
5.0k
3
votes
0
replies
6.4k
views
Answer:
Answer: Drawing ChIPseq graphics
updated 3.2 years ago by
Ram
44k • written 10.5 years ago by
Ryan Dale
5.0k
0
votes
0
replies
7.8k
views
Comment:
Comment: Pick random position from specific genomic regions
updated 3.3 years ago by
Ram
44k • written 10.6 years ago by
Ryan Dale
5.0k
1
vote
0
replies
5.9k
views
Answer:
A: Lesson Plan To Teach Python For Absolute Beginners
10.9 years ago by
Ryan Dale
5.0k
2
votes
0
replies
4.0k
views
Answer:
A: Bedgraph And Bigwig Files From Multiple Bams
10.9 years ago by
Ryan Dale
5.0k
10
votes
3
replies
9.5k
views
Answer:
A: To What Degree Could We Determine Whether A Gene Is Expressed?
11.0 years ago by
Ryan Dale
5.0k
1
vote
0
replies
5.0k
views
Answer:
A: How To Minimize The Bias Caused By Rna Amplification In Rna-Seq?
11.0 years ago by
Ryan Dale
5.0k
1
vote
0
replies
3.7k
views
Comment:
C: How To Display Eight Samples As Ucsc Custom Tracks
11.3 years ago by
Ryan Dale
5.0k
0
votes
0
replies
15k
views
Comment:
C: Plotting Reads Around Tss
11.3 years ago by
Ryan Dale
5.0k
0
votes
0
replies
7.9k
views
Comment:
C: Is This A Valid Gff3 File For Htseq?
11.3 years ago by
Ryan Dale
5.0k
0
votes
0
replies
7.9k
views
Comment:
C: Is This A Valid Gff3 File For Htseq?
11.3 years ago by
Ryan Dale
5.0k
0
votes
1
reply
15k
views
Comment:
Comment: Plotting Reads Around Tss
updated 2.1 years ago by
Ram
44k • written 11.3 years ago by
Ryan Dale
5.0k
0
votes
1
reply
7.9k
views
Comment:
C: Is This A Valid Gff3 File For Htseq?
11.3 years ago by
Ryan Dale
5.0k
0
votes
1
reply
7.9k
views
Comment:
C: Is This A Valid Gff3 File For Htseq?
11.3 years ago by
Ryan Dale
5.0k
0
votes
0
replies
16k
views
Comment:
C: Is There Such A Thing As A Ucsc Api?
11.7 years ago by
Ryan Dale
5.0k
2
votes
1
reply
7.4k
views
Answer:
A: How Do You Use Cloud Computing For Bioinformatics In 2013?
11.7 years ago by
Ryan Dale
5.0k
3
votes
0
replies
5.2k
views
Answer:
A: Please Help Me Check My Workflow For Paired-End Sequencing
11.8 years ago by
Ryan Dale
5.0k
1
vote
1
reply
2.4k
views
Comment:
C: Very Lightweight And Fast Genomic Bed Viewer
11.9 years ago by
Ryan Dale
5.0k
0
votes
0
replies
7.2k
views
Comment:
C: Upregulated And Downregulated Genes
11.9 years ago by
Ryan Dale
5.0k
0
votes
1
reply
2.4k
views
Comment:
C: Very Lightweight And Fast Genomic Bed Viewer
11.9 years ago by
Ryan Dale
5.0k
0
votes
0
replies
5.7k
views
Answer:
A: Rrna Removal In Rna-Seq Data
11.9 years ago by
Ryan Dale
5.0k
2
votes
0
replies
21k
views
Answer:
A: Normalized Bigwig Files
11.9 years ago by
Ryan Dale
5.0k
1
vote
0
replies
8.1k
views
Comment:
C: Get A Graphical Representation Of Number Of Reads In Bam File For A Certain Geno
11.9 years ago by
Ryan Dale
5.0k
8
votes
1
reply
35k
views
Answer:
A: Converting Bam To Bedgraph For Viewing On Ucsc?
11.9 years ago by
Ryan Dale
5.0k
0
votes
1
reply
35k
views
Comment:
C: Converting Bam To Bedgraph For Viewing On Ucsc?
12.0 years ago by
Ryan Dale
5.0k
3
votes
1
reply
8.7k
views
Answer:
A: Parameters That Determine Meme Speed And Homer Speed For Motif Discovery?
12.0 years ago by
Ryan Dale
5.0k
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