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5
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1
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9.1k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
4.1 years ago by Kamil ★ 2.3k
0
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1
reply
2.7k
views
Comment: C: file and directory management best practices
4.3 years ago by Kamil ★ 2.3k
1
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0
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5.3k
views
Answer: A: How To Convert Hg19_Known_Gene From Text Format To Gtf Or Bed?
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 2.3k
3
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0
replies
9.9k
views
Answer: A: Obtaining Ucsc Tables Via Ftp And Converting Them To Proper Gff3 Via Genepredtog
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 2.3k
0
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0
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4.8k
views
Comment: C: pytabix - quickly retrieve rows from a table of positions or regions
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 2.3k
2
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0
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3.4k
views
Answer: A: dbSNP: minor alleles for a list of SNPs
updated 5.0 years ago by 44k • written 8.9 years ago by ★ 2.3k
6
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1
reply
17k
views
Answer: A: Is there a fixed convention for matching dna/rna/aa letter symbols to colors?
updated 5.0 years ago by 44k • written 8.9 years ago by ★ 2.3k
0
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1
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3.6k
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Comment: Comment: Determine if a transcription factor is bound with CENTIPEDE
updated 24 months ago by 44k • written 8.9 years ago by ★ 2.3k
0
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0
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2.2k
views
Comment: C: Export of SNP data from 1000Genomes for several hundred genes
updated 5.0 years ago by 44k • written 8.9 years ago by ★ 2.3k
1
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0
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2.5k
views
Answer: A: how to find snps in the 25kb upstream and downstream of one gene
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.3k
3
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1
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3.7k
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Answer: A: Beagle files using the latest 1000 genomes
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 2.3k
0
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0
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3.3k
views
Answer: A: batch program to convert nucleotide into protein
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
1
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0
replies
1.9k
views
Answer: A: Question about RNA-seq and chipseq quality table/ fig
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
0
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0
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6.6k
views
Comment: C: DNA binding site motif database
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
1
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1
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9.1k
views
Answer: Answer: how to merge overlapping intervals in a bedgraph file
updated 2.3 years ago by 44k • written 9.1 years ago by ★ 2.3k
4
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1
reply
6.6k
views
Answer: A: DNA binding site motif database
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
0
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2
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2.0k
views
Answer: A: can not get the alignment result from needle alignment
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
0
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0
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6.9k
views
Answer: A: TruSeq strand-specificity in rsem-calculate-expression
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
0
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1
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5.2k
views
Comment: C: problem with KEGG pathway gene extraction
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
3
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2
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5.2k
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Answer: A: problem with KEGG pathway gene extraction
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
0
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0
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2.1k
views
Answer: A: Error in camera function in limma
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
3
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0
replies
4.2k
views
Answer: A: Difference between pair alignment rate and properly paired reads
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
0
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1
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3.6k
views
Answer: A: featureCounts/HTSeq-count problem with different annotation files
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
1
vote
1
reply
15k
views
Answer: A: paired end illumina reads
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 2.3k
0
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0
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2.6k
views
Answer: A: RNAseq project ideas for young intern with MISO?
updated 5.1 years ago by 44k • written 9.3 years ago by ★ 2.3k
0
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0
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2.1k
views
Answer: A: Affymetrix Gene Lists?
updated 5.1 years ago by 44k • written 9.4 years ago by ★ 2.3k
1
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2
replies
17k
views
Comment: C: ggrepel: repel overlapping text labels in ggplot2
updated 6.1 years ago by 44k • written 8.9 years ago by ★ 2.3k
17
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9
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17k
views
6 follow
Tool: ggrepel: repel overlapping text labels in ggplot2
R visualization
updated 17 months ago by 44k • written 8.9 years ago by ★ 2.3k
0
votes
0
replies
3.8k
views
Comment: C: RNA-seq: differentially expressed genes without genome reference
updated 6.2 years ago by 44k • written 8.1 years ago by ★ 2.3k
1
vote
1
reply
3.8k
views
Answer: A: RNA-seq: differentially expressed genes without genome reference
updated 6.2 years ago by 44k • written 8.8 years ago by ★ 2.3k
23
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3
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61k
views
Answer: A: Calculating TPM from featureCounts output
7.2 years ago by Kamil ★ 2.3k
5
votes
2
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2.3k
views
Comment: C: Tutorials for Library Normalization in DESeq2 and EdgeR
7.2 years ago by Kamil ★ 2.3k
0
votes
1
reply
29k
views
Comment: C: Produce PCA for 1000 Genomes Phase III in VCF format
7.2 years ago by Kamil ★ 2.3k
32
votes
6
replies
13k
views
Tool: FASTA and FASTQ tools
Cpp FASTA Python FASTQ
updated 23 months ago by 44k • written 9.5 years ago by ★ 2.3k
1
vote
1
reply
36k
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Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
7.9 years ago by Kamil ★ 2.3k
1
vote
1
reply
36k
views
Comment: C: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
7.9 years ago by Kamil ★ 2.3k
1
vote
2
replies
61k
views
Comment: C: Calculating TPM from featureCounts output
8.1 years ago by Kamil ★ 2.3k
1
vote
1
reply
6.8k
views
Answer: A: Download Transcription Factor Targeting Genes Data
8.1 years ago by Kamil ★ 2.3k
2
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0
replies
29k
views
Answer: A: How To Identify Targets Of A Transcription Factor ?
8.1 years ago by Kamil ★ 2.3k
2
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0
replies
25k
views
Answer: A: How Can I Find Target Genes Of A Transcription Factor?
8.1 years ago by Kamil ★ 2.3k
1
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0
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4.6k
views
Answer: A: quantify signal in a chromosomal interval in different .bw files
8.6 years ago by Kamil ★ 2.3k
0
votes
0
replies
3.2k
views
Answer: Answer: automated gene ontology enrichment for simple gene list (not microarray data)
updated 2.4 years ago by 44k • written 8.8 years ago by ★ 2.3k
1
vote
0
replies
40k
views
Comment: C: Best Way To Normalize Rna-Seq Data For Expression Profiling
8.8 years ago by Kamil ★ 2.3k
0
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1
reply
2.3k
views
Answer: A: quick question on paired RNAseq reads
8.8 years ago by Kamil ★ 2.3k
0
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0
replies
17k
views
Comment: C: ggrepel: repel overlapping text labels in ggplot2
8.9 years ago by Kamil ★ 2.3k
0
votes
0
replies
3.6k
views
Comment: C: Determine if a transcription factor is bound with CENTIPEDE
8.9 years ago by Kamil ★ 2.3k
7
votes
8
replies
3.6k
views
Tutorial: Determine if a transcription factor is bound with CENTIPEDE
ChIP-Seq transcription-factor DNase-Seq CENTIPEDE
updated 24 months ago by 44k • written 9.4 years ago by ★ 2.3k
0
votes
0
replies
3.7k
views
Comment: C: Beagle files using the latest 1000 genomes
9.0 years ago by Kamil ★ 2.3k
1
vote
1
reply
3.6k
views
Comment: C: Determine if a transcription factor is bound with CENTIPEDE
9.1 years ago by Kamil ★ 2.3k
2
votes
0
replies
2.1k
views
Answer: A: TBLASTN on a large DNA database (352GB)
9.1 years ago by Kamil ★ 2.3k
97 results • Page 1 of 2
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