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4
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0
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3.9k
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Answer: A: why is there a different results with normal fit and contrast matrix fit ?
9.1 years ago by Kamil ★ 2.3k
0
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1
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6.6k
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Comment: C: DNA binding site motif database
9.1 years ago by Kamil ★ 2.3k
1
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0
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11k
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Comment: C: Create Interval List for Picard CollectRNASeqmetrics
9.1 years ago by Kamil ★ 2.3k
4
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0
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4.7k
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Answer: A: Merge 2 files based on rs number but keep all info only from the first file
9.1 years ago by Kamil ★ 2.3k
0
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1
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3.8k
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Answer: A: Basic SNP / RSID question
9.1 years ago by Kamil ★ 2.3k
1
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0
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1.6k
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Comment: C: How to detect the amount of reads from BAM -file in PicardTools?
9.1 years ago by Kamil ★ 2.3k
4
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0
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4.2k
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Answer: A: Single cell RNA seq data analysis
9.2 years ago by Kamil ★ 2.3k
0
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1
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5.2k
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Answer: Answer: pathway mapping using KEGG
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 2.3k
3
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1
reply
11k
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Answer: A: Get Sra Ids From Geo
9.3 years ago by Kamil ★ 2.3k
1
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0
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3.0k
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Answer: Answer: Is there a tool to retrive transcription factors (Tfs) which have the common bin
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 2.3k
0
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0
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5.7k
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Comment: Comment: Pysam cannot find index
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 2.3k
0
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1
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5.7k
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Comment: Comment: Pysam cannot find index
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 2.3k
4
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1
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15k
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Answer: A: Rank Normalization of genes in Expression Data
9.3 years ago by Kamil ★ 2.3k
1
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0
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31k
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Answer: Answer: Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
updated 2.0 years ago by 44k • written 9.3 years ago by ★ 2.3k
0
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0
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4.0k
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Answer: Answer: Using Ensembl API to get a Gene ID from a protein ID
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 2.3k
1
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0
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2.2k
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Answer: Answer: How to find Minimum dominating set in a biological network
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 2.3k
2
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1
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2.8k
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Answer: Answer: paper reference of SRA dataset
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 2.3k
0
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1
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31k
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Comment: C: Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
9.4 years ago by Kamil ★ 2.3k
25
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3
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5.1k
views
Tool: Quick statistics from the command line
statistics C
updated 24 months ago by 44k • written 9.4 years ago by ★ 2.3k
0
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0
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2.8k
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Answer: Answer: how to deal with multiple probes, control probes and probes with no ENTREX gene
updated 24 months ago by 44k • written 9.4 years ago by ★ 2.3k
5
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1
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4.5k
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Answer: Answer: count the number of transcription factor binding sites
updated 24 months ago by 44k • written 9.4 years ago by ★ 2.3k
1
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0
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2.6k
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Answer: A: Transcription factor binding on DHS sites
9.4 years ago by Kamil ★ 2.3k
7
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2
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4.3k
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Tool: picardmetrics: Run Picard tools and collate the outputs into one file.
RNA-Seq Bash R Picard
updated 23 months ago by 44k • written 9.6 years ago by ★ 2.3k
3
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1
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4.5k
views
Answer: Answer: Is There Any Way To Retrieve Protein Sequences In Fasta Format using a Kegg Path
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.3k
4
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1
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5.1k
views
Answer: Answer: FAST: FAST Analysis of Sequences Toolbox
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.3k
0
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1
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7.7k
views
Comment: Comment: How to find start and stop codon for sequences in a fasta file?
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.3k
1
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1
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7.7k
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Comment: Comment: How to find start and stop codon for sequences in a fasta file?
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.3k
1
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1
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7.7k
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Answer: Answer: How to find start and stop codon for sequences in a fasta file?
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.3k
0
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0
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6.9k
views
Answer: A: Mark duplicates for single end reads: Why only 5'end?
9.6 years ago by Kamil ★ 2.3k
10
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1
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18k
views
Answer: A: How to determine if SRA file is single or paired end?
9.6 years ago by Kamil ★ 2.3k
6
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1
reply
36k
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Answer: A: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
9.6 years ago by Kamil ★ 2.3k
1
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0
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1.6k
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Answer: Answer: ncbi shows another chromosome of a SNP
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.3k
4
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0
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2.0k
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Answer: A: span of GFF file
9.6 years ago by Kamil ★ 2.3k
0
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1
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3.2k
views
Comment: C: Alignment produces BAM file with sorted reads, but cannot see alignment in viewe
9.6 years ago by Kamil ★ 2.3k
0
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1
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3.2k
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Answer: A: Alignment produces BAM file with sorted reads, but cannot see alignment in viewe
9.6 years ago by Kamil ★ 2.3k
1
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0
replies
2.4k
views
Answer: A: PWM Scan For Toxoplasma gondii
updated 3.7 years ago by 44k • written 9.6 years ago by ★ 2.3k
0
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0
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4.6k
views
Comment: C: where can i download ncbi and swissuniprot ftp protein, gene and genome sequence
9.6 years ago by Kamil ★ 2.3k
3
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1
reply
4.6k
views
Answer: Answer: where can i download ncbi and swissuniprot ftp protein, gene and genome sequence
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.3k
2
votes
0
replies
7.6k
views
Answer: Answer: Genome-wide homology human versus mouse
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.3k
2
votes
0
replies
2.6k
views
Answer: Answer: whre we can get BRCA1 and 2 SNPs data for indian population?
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.3k
0
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1
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25k
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Comment: C: How Can I Find Target Genes Of A Transcription Factor?
9.7 years ago by Kamil ★ 2.3k
0
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0
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11k
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Answer: Answer: Create Interval List for Picard CollectRNASeqmetrics
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.3k
2
votes
2
replies
13k
views
Answer: Answer: Ribosomal Intervals For Collectrnaseqmetrics
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.3k
1
vote
0
replies
29k
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Comment: Comment: How To Retrieve A .Fastaq File From Sra Using Wget? (And Not Aspera)
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.3k
1
vote
1
reply
5.1k
views
Answer: Answer: What is my RNA-seq data's library-type?!
updated 3.7 years ago by 44k • written 10.1 years ago by ★ 2.3k
2
votes
2
replies
4.8k
views
Tool: pytabix - quickly retrieve rows from a table of positions or regions
tabix C python
updated 17 months ago by 44k • written 10.6 years ago by ★ 2.3k
2
votes
0
replies
3.5k
views
Answer: A: Howto Collapse Multiple Exonerate Gff Into One Gene Prediction Set
13.5 years ago by Kamil ★ 2.3k
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