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6
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2
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4.4k
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Answer: Answer: Is it possible to extract the reference sequence from the BWA index files?
updated 2.4 years ago by 44k • written 8.8 years ago by 7.8k
3
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0
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2.5k
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Answer: Answer: Significant of LASSO regression parameters
updated 2.4 years ago by 44k • written 8.8 years ago by 7.8k
2
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0
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4.1k
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Answer: Answer: Ion Torrent sample data
updated 2.4 years ago by 44k • written 8.8 years ago by 7.8k
0
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1
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5.6k
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Comment: C: Reading CRAM files in pysam
8.9 years ago by matted 7.8k
1
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1
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2.1k
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Comment: C: Is a fully assembled 129S1/SvlmJ mouse strain available for download? If so wher
9.0 years ago by matted 7.8k
0
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0
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3.4k
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Comment: Comment: DeepTools Error: Be sure that the bam files you are using is indexed.
updated 2.3 years ago by 44k • written 9.1 years ago by 7.8k
3
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1
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3.4k
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Answer: Answer: DeepTools Error: Be sure that the bam files you are using is indexed.
updated 2.3 years ago by 44k • written 9.1 years ago by 7.8k
0
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1
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3.6k
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Comment: C: Question on Smith-Waterman
9.1 years ago by matted 7.8k
7
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2
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2.5k
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Answer: Answer: Publications with poor sequencing data
updated 2.2 years ago by 44k • written 9.2 years ago by 7.8k
0
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0
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3.4k
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Answer: Answer: Samtools view pipe and position
updated 2.2 years ago by 44k • written 9.2 years ago by 7.8k
0
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0
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2.6k
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Comment: Comment: Why is the scaling factor always million while dealing with RNA-Seq expression?
updated 2.2 years ago by 44k • written 9.2 years ago by 7.8k
3
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2
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4.7k
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Answer: Answer: what is the fastest way to sort big bam files? (300Gb)
updated 2.2 years ago by 44k • written 9.2 years ago by 7.8k
0
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0
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10k
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Answer: Answer: What means Gaussian Kernel?
updated 2.2 years ago by 44k • written 9.3 years ago by 7.8k
3
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1
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4.6k
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Comment: Comment: fastq to fasta perl
updated 2.8 years ago by 44k • written 9.4 years ago by 7.8k
1
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0
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3.8k
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Comment: Comment: Is it possible to guess sequencing platform used based on a FASTQ/BAM file?
updated 23 months ago by 44k • written 9.4 years ago by 7.8k
1
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0
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9.5k
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Comment: C: comparing two fastq files
9.4 years ago by matted 7.8k
1
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2
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17k
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Comment: Comment: Subsample BAM to fixed number of alignments
updated 23 months ago by 44k • written 9.5 years ago by 7.8k
2
votes
2
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4.2k
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Answer: Answer: BWA-mem read mapping depends on chromosome order
updated 23 months ago by 44k • written 9.5 years ago by 7.8k
0
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1
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17k
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Comment: Comment: Subsample BAM to fixed number of alignments
updated 23 months ago by 44k • written 9.5 years ago by 7.8k
5
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1
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17k
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Answer: Answer: Subsample BAM to fixed number of alignments
updated 23 months ago by 44k • written 9.5 years ago by 7.8k
2
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0
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3.4k
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Answer: A: Why does BWA give different Mapping Quality to identical reads?
9.6 years ago by matted 7.8k
1
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0
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6.2k
views
Answer: Answer: Docker - one image to rule them all?
updated 2.4 years ago by 44k • written 9.6 years ago by 7.8k
0
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0
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3.9k
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Comment: Comment: How to calculate the joint entropy H(X,Y,Z) where X, Y, Z are position of MSA
updated 2.4 years ago by 44k • written 9.6 years ago by 7.8k
0
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0
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1.9k
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Comment: Comment: MultiGPS replicate count
updated 2.5 years ago by 44k • written 9.7 years ago by 7.8k
3
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0
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11k
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Answer: Answer: How can I shuffle a set of sequences while preserving the dinucleotide distribut
updated 2.5 years ago by 44k • written 9.7 years ago by 7.8k
2
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1
reply
10k
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Answer: Answer: ALL RNA-seq publicly available data
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
3
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2
replies
6.6k
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Answer: Answer: Indexing reference genome for GATK
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
0
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1
reply
7.8k
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Answer: Answer: error using biocLite: not found
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
1
vote
1
reply
4.3k
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Answer: Answer: Bulk Segregant Analysis using next generation sequencing data
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
1
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0
replies
6.1k
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Comment: Comment: Keeping paired reads together when sorting BAM file by name
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
2
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1
reply
2.5k
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Answer: Answer: Discrepancies in Bam Read Lengths
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
0
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1
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6.1k
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Answer: Answer: Keeping paired reads together when sorting BAM file by name
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
0
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0
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2.3k
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Answer: Answer: SRA file looks wierd after conversion to fastq
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
1
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0
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4.2k
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Answer: Answer: How to separate plastid, mitochondrial, and nuclear genomes from whole genome se
updated 2.6 years ago by 44k • written 9.8 years ago by 7.8k
0
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0
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2.7k
views
Answer: Answer: evaluate RNA extraction based on sequencing
updated 2.7 years ago by 44k • written 9.9 years ago by 7.8k
1
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0
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3.2k
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Answer: Answer: Help with BioPython manual example
updated 2.7 years ago by 44k • written 9.9 years ago by 7.8k
0
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0
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4.3k
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Comment: Comment: I have demultiplexed files for a single biological replicate. When to combine th
updated 2.7 years ago by 44k • written 9.9 years ago by 7.8k
1
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0
replies
3.9k
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Answer: Answer: How to align, filter, and call TruSeq Custom Amplicon data?
updated 2.7 years ago by 44k • written 9.9 years ago by 7.8k
2
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1
reply
4.3k
views
Answer: Answer: I have demultiplexed files for a single biological replicate. When to combine th
updated 2.7 years ago by 44k • written 9.9 years ago by 7.8k
0
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0
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15k
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Comment: Comment: ChIP-Seq: Calling peaks with replicates
updated 2.9 years ago by 44k • written 10.1 years ago by 7.8k
3
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1
reply
2.9k
views
Answer: Answer: Author affiliation and for-profit licensing of published software
updated 2.9 years ago by 44k • written 10.2 years ago by 7.8k
0
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1
reply
4.0k
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Comment: C: Analyzing genome wide sequencing data for control and experimental groups with b
10.2 years ago by matted 7.8k
1
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0
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4.8k
views
Comment: Comment: What's the real difference between these two types of methods for assessing diff
updated 2.9 years ago by 44k • written 10.2 years ago by 7.8k
2
votes
1
reply
4.8k
views
Comment: Comment: What's the real difference between these two types of methods for assessing diff
updated 2.9 years ago by 44k • written 10.2 years ago by 7.8k
0
votes
0
replies
5.2k
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Comment: Comment: Rfam v12 -New released- Doubts- How do you face it?
updated 2.9 years ago by 44k • written 10.2 years ago by 7.8k
1
vote
1
reply
6.1k
views
Comment: Comment: Pair-end reads are merged into single file: need to separate
updated 2.9 years ago by 44k • written 10.2 years ago by 7.8k
2
votes
3
replies
15k
views
Answer: Answer: ChIP-Seq: Calling peaks with replicates
updated 2.9 years ago by 44k • written 10.2 years ago by 7.8k
4
votes
1
reply
6.1k
views
Comment: Comment: Create smaller bam file based on the list of sequences
updated 2.9 years ago by 44k • written 10.3 years ago by 7.8k
1
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1
reply
6.1k
views
Answer: Answer: Create smaller bam file based on the list of sequences
updated 2.9 years ago by 44k • written 10.3 years ago by 7.8k
1
vote
0
replies
8.4k
views
Comment: C: How to reduce reads in fastq, bam, bad files in a random manner?
10.3 years ago by matted 7.8k
333 results • Page 2 of 7
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