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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
6 months ago by Chris Dean ▴ 420
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1.1k
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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
6 months ago by Chris Dean ▴ 420
0
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1
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1.1k
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Answer: Answer: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
6 months ago by Chris Dean ▴ 420
0
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1
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1.1k
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Comment: Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
7 months ago by Chris Dean ▴ 420
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1
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494
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Comment: Comment: CCA with random effects model
8 months ago by Chris Dean ▴ 420
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0
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338
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Comment: Comment: Difference in relative abundance between MicrobiomeDB and r phyloseq
8 months ago by Chris Dean ▴ 420
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1
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791
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Comment: Comment: Differential express genes in imbalance groups
8 months ago by Chris Dean ▴ 420
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1.1k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
8 months ago by Chris Dean ▴ 420
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1
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1.1k
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
8 months ago by Chris Dean ▴ 420
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0
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374
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Comment: Comment: UMI and index sequence in RNA-seq data
9 months ago by Chris Dean ▴ 420
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0
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614
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Comment: Comment: How to do DESeq2 on Kallisto Data
9 months ago by Chris Dean ▴ 420
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1
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465
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Comment: Comment: Decision of Random Effect and Random Slope in rare cases
9 months ago by Chris Dean ▴ 420
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0
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435
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Comment: Comment: Correcting Farm effects
10 months ago by Chris Dean ▴ 420
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2
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547
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Confusion about "Top Features table" in cellranger web summary output for CITE-Seq libraries
single-cell
updated 11 months ago by 85k • written 11 months ago by ▴ 420
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0
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703
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Answer: Answer: Options for assigning cell labels to barcodes from CITE-seq experiment
12 months ago by Chris Dean ▴ 420
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0
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703
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Comment: Comment: Options for assigning cell labels to barcodes from CITE-seq experiment
12 months ago by Chris Dean ▴ 420
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3
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703
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Options for assigning cell labels to barcodes from CITE-seq experiment
single-cell
12 months ago by Chris Dean ▴ 420
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0
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1.5k
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Comment: Comment: Phyloseq sample data error: non-zero dimensions?
13 months ago by Chris Dean ▴ 420
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1
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1.5k
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Comment: Comment: Phyloseq sample data error: non-zero dimensions?
13 months ago by Chris Dean ▴ 420
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0
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854
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Comment: Comment: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
13 months ago by Chris Dean ▴ 420
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1
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854
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Answer: Answer: No hits for influenza virus in an RNA seq. data using FAST Q screen (from babrah
13 months ago by Chris Dean ▴ 420
6
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1
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8.8k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
14 months ago by Chris Dean ▴ 420
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1
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666
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Comment: Comment: Adjusting covariate in regression model
15 months ago by Chris Dean ▴ 420
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0
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615
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Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
16 months ago by Chris Dean ▴ 420
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2
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615
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Assigning cell types to cells based on expression of cell surface markers
tapestri single-cell
16 months ago by Chris Dean ▴ 420
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0
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1.2k
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Comment: Comment: phyloseq error
20 months ago by Chris Dean ▴ 420
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0
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927
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Comment: Comment: Database for taxonomic assignment of shotgun sequencing reads data
24 months ago by Chris Dean ▴ 420
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0
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910
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Comment: Comment: Need help in using dada2
2.1 years ago by Chris Dean ▴ 420
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0
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639
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Comment: Comment: Identification of conserved and varaible regions on 16s rRNA sequences
2.4 years ago by Chris Dean ▴ 420
2
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1
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1.6k
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Comment: Comment: losing large amount of reads when using Qiime2 vsearch joinpairs command
2.6 years ago by Chris Dean ▴ 420
1
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1
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1.1k
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Comment: Comment: Load cvs files into R to make manhattan plots using ggplot
2.7 years ago by Chris Dean ▴ 420
1
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2
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1.3k
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Comment: Comment: What should I choose for a bachelor's and master's degree
2.8 years ago by Chris Dean ▴ 420
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1
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1.2k
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Comment: Comment: Bioinformatics Scientist
2.8 years ago by Chris Dean ▴ 420
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0
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997
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Comment: Comment: Coping with duplicated sequences in shotgun analysis
2.8 years ago by Chris Dean ▴ 420
1
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0
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922
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Comment: Comment: Name for bulk-metagenomic studies?
2.8 years ago by Chris Dean ▴ 420
2
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1
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848
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Choosing the number of components in a DMM model
Microbiome Clustering Statistics
updated 2.8 years ago by 27k • written 2.8 years ago by ▴ 420
0
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1
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1.2k
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Comment: Comment: Trimmomatic parameters
2.9 years ago by Chris Dean ▴ 420
0
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0
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900
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Comment: Comment: How to calculate similarity of two bacterial compositions?
2.9 years ago by Chris Dean ▴ 420
0
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1
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900
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Comment: Comment: How to calculate similarity of two bacterial compositions?
2.9 years ago by Chris Dean ▴ 420
0
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0
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1.0k
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Comment: Comment: rarefaction curve
3.0 years ago by Chris Dean ▴ 420
0
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1
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977
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Comment: Comment: ordination analysis
3.0 years ago by Chris Dean ▴ 420
0
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1
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977
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Answer: Answer: ordination analysis
3.0 years ago by Chris Dean ▴ 420
2
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1
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2.3k
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Answer: Answer: extremely low classified reads from sequencing gut microbiome data, applying rea
3.0 years ago by Chris Dean ▴ 420
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0
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1.1k
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Comment: Comment: bowtie2 and then HISAT2? What does it mean in Data processing details on a paper
3.1 years ago by Chris Dean ▴ 420
0
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1
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3.0k
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Comment: Comment: Recommended mapper
3.1 years ago by Chris Dean ▴ 420
1
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1
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3.0k
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Answer: Answer: Recommended mapper
3.1 years ago by Chris Dean ▴ 420
0
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0
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1.6k
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Answer: Answer: help with time series analysis
3.1 years ago by Chris Dean ▴ 420
0
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2
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1.7k
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Comment: Comment: Subset a Vcf
3.1 years ago by Chris Dean ▴ 420
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1
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1.2k
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Answer: Answer: Memory and time Estimates for 100x genome alignments
3.2 years ago by Chris Dean ▴ 420
1
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1
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1.4k
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Answer: Answer: Type of analyses Which can be performed on Whole Genome Data
3.2 years ago by Chris Dean ▴ 420
64 results • Page 1 of 2
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