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Comment: Comment: bowtie2 mapping qualities of 0
16 months ago by kalavattam ▴ 280
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1.9k
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Comment: Comment: Dealing with multimapped reads with Chip-seq and ATAC-seq data when studying Tra
16 months ago by kalavattam ▴ 280
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
18 months ago by kalavattam ▴ 280
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0
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2.2k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
18 months ago by kalavattam ▴ 280
0
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0
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2.2k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
18 months ago by kalavattam ▴ 280
0
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1
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2.2k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
18 months ago by kalavattam ▴ 280
0
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1
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2.2k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
18 months ago by kalavattam ▴ 280
6
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17
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2.2k
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MacOS Quicklook plugin for gtf and gff3 files?
gtf gff3 MacOS
updated 18 months ago by 44k • written 18 months ago by ▴ 280
0
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1
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2.2k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
18 months ago by kalavattam ▴ 280
0
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1
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2.2k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
18 months ago by kalavattam ▴ 280
0
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1
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2.2k
views
Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
18 months ago by kalavattam ▴ 280
0
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0
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1.7k
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Comment: Comment: On "wings" in volcano plots...
18 months ago by kalavattam ▴ 280
0
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3
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1.7k
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Comment: Comment: On "wings" in volcano plots...
18 months ago by kalavattam ▴ 280
7
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6
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1.7k
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On "wings" in volcano plots...
DEG volcano DGE statistics DE
updated 18 months ago by 85k • written 18 months ago by ▴ 280
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1.0k
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Comment: Comment: How much resources does HiCanu need to assemble PacBio sequence
19 months ago by kalavattam ▴ 280
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30k
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Comment: Comment: Bowtie2 parameters for best alignment
20 months ago by kalavattam ▴ 280
1
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438
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Split RNA-seq bam by strand: normalize before or after split?
strand forward RNA-seq bam reverse
2.1 years ago by kalavattam ▴ 280
0
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0
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3.4k
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Answer: Answer: Merge STAR Log.final.out files together
2.4 years ago by kalavattam ▴ 280
0
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1
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1.7k
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Comment: Comment: Mapping reads using kallisto - rna seq analysis
2.4 years ago by kalavattam ▴ 280
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0
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1.0k
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Comment: Comment: Reference Annotation GTF that includes piRNAs?
2.4 years ago by kalavattam ▴ 280
0
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1
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1.0k
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Comment: Comment: Reference Annotation GTF that includes piRNAs?
2.4 years ago by kalavattam ▴ 280
0
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1
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1.7k
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Comment: Comment: Mapping reads using kallisto - rna seq analysis
2.4 years ago by kalavattam ▴ 280
0
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0
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1.6k
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Comment: Comment: Quick way to get a field such as QNAME from the last read in a bam file?
15 months ago by kalavattam ▴ 280
0
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1
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1.6k
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Comment: Comment: Quick way to get a field such as QNAME from the last read in a bam file?
2.4 years ago by kalavattam ▴ 280
0
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1
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1.6k
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Comment: Comment: Quick way to get a field such as QNAME from the last read in a bam file?
2.4 years ago by kalavattam ▴ 280
2
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6
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1.6k
views
Quick way to get a field such as QNAME from the last read in a bam file?
bam samtools
15 months ago by kalavattam ▴ 280
2
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1
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1.1k
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Fast way to use Samtools to sort a BAM file by queryname similar to `picard SortSam SORT_ORDER=queryname`?
samtools bam picard
10 days ago by kalavattam ▴ 280
0
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0
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10k
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Comment: Comment: How does salmon deal with decoy?
2.5 years ago by kalavattam ▴ 280
0
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0
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1.6k
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Comment: Comment: How to remove Mate mapped to a different chromosome
2.7 years ago by kalavattam ▴ 280
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2.5k
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Comment: Comment: Duplicate reads remain in bam after picard MarkDuplicates --REMOVE_DUPLICATES tr
2.7 years ago by kalavattam ▴ 280
0
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1
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2.5k
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Comment: Comment: Duplicate reads remain in bam after picard MarkDuplicates --REMOVE_DUPLICATES tr
2.7 years ago by kalavattam ▴ 280
1
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4
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2.5k
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Duplicate reads remain in bam after picard MarkDuplicates --REMOVE_DUPLICATES true
deduplication qname fastq Picard bam
2.7 years ago by kalavattam ▴ 280
0
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0
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645
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Align sample to two different assemblies, then classify pairs that differ significantly in alignment score
Bowtie2 classification mismatch alignment gaps
3.1 years ago by kalavattam ▴ 280
2
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1
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2.0k
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Answer: Answer: How to study transposable elements expression relationship with its closest gene
3.1 years ago by kalavattam ▴ 280
1
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0
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2.3k
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Answer: Answer: How to analysis 4c seq 3c seq data
3.6 years ago by kalavattam ▴ 280
0
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0
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1.2k
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Answer: Answer: recent Hi-C databases
3.6 years ago by kalavattam ▴ 280
0
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0
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1.1k
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Comment: Comment: Bioinformatics definition of TAD boundary
3.5 years ago by kalavattam ▴ 280
0
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0
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5.0k
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Comment: Comment: ICE normalization using JuicerTools
3.6 years ago by kalavattam ▴ 280
3
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0
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761
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Answer: Answer: HI-C analysis in the cloud environment
3.6 years ago by kalavattam ▴ 280
0
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1
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5.0k
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Answer: Answer: ICE normalization using JuicerTools
3.6 years ago by kalavattam ▴ 280
0
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0
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660
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Plot only the genome-wide trans contacts in a Hi-C matrix (no cis contacts)
juicer Hi-C inter-chromosomal cooler trans
3.6 years ago by kalavattam ▴ 280
1
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0
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21k
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Comment: C: How to get all genes for a specific list of regions in R preferably using Biomar
4.1 years ago by kalavattam ▴ 280
4
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2
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9.8k
views
Answer: C: MACS2 --SPMR and --nolambda usage for version 2.1.2
5.6 years ago by kalavattam ▴ 280
93 results • Page 2 of 2
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