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Comment: Comment: BEDOPS gtf2bed conversion error with Ensembl GTF
20 months ago by kalavattam ▴ 350
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2.1k
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Comment: Comment: Is there a way to subsample Hi-C at Hi-C matrix .cool file?
20 months ago by kalavattam ▴ 350
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1
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2.3k
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Comment: Comment: How to convert data in r?
20 months ago by kalavattam ▴ 350
1
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1
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2.3k
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Comment: Comment: How to convert data in r?
20 months ago by kalavattam ▴ 350
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4.5k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
21 months ago by kalavattam ▴ 350
0
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1
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4.5k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
21 months ago by kalavattam ▴ 350
0
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1
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2.1k
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Answer: Answer: Is there a way to subsample Hi-C at Hi-C matrix .cool file?
21 months ago by kalavattam ▴ 350
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2.7k
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Comment: Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
21 months ago by kalavattam ▴ 350
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2
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2.7k
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Comment: Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
updated 21 months ago by 45k • written 21 months ago by ▴ 350
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1
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1.2k
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Comment: Comment: Centrality analysis to identify TFs
21 months ago by kalavattam ▴ 350
6
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5
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2.7k
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ChIP-seq visualization: Is it valid to do a coverage normalization in addition to applying a spike-in-derived scaling factor?
ChIP-seq normalization scaling-factor coverage spike-in
updated 21 months ago by 45k • written 21 months ago by ▴ 350
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2.3k
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Answer: Answer: What is an appropriate cut off for p-values and log fold changes during the anal
21 months ago by kalavattam ▴ 350
0
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1
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4.5k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
22 months ago by kalavattam ▴ 350
0
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0
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4.5k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
22 months ago by kalavattam ▴ 350
0
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1
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4.5k
views
Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
22 months ago by kalavattam ▴ 350
0
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1
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4.5k
views
Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
22 months ago by kalavattam ▴ 350
10
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13
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4.5k
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Seeking feedback on ChIP-seq normalization method: Calculating scaling factors by dividing input by IP, including spike-in
ChIP-seq spike-in scaling-factor coverage
10 months ago by kalavattam ▴ 350
1
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1
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1.3k
views
Spike-in normalization via deepTools multiBamSummary --scalingFactors: What's an appropriate --binSize?
spike-in ChIP-seq deepTools
updated 22 months ago by ★ 1.5k • written 22 months ago by ▴ 350
0
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0
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263k
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Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
22 months ago by kalavattam ▴ 350
0
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0
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263k
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Comment: Comment: Tools To Calculate Average Coverage For A Bam File?
22 months ago by kalavattam ▴ 350
2
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1
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2.3k
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Comment: Comment: new visualization method for dimension reduction technique
23 months ago by kalavattam ▴ 350
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0
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2.2k
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Comment: Comment: bowtie2 mapping qualities of 0
23 months ago by kalavattam ▴ 350
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0
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2.2k
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Comment: Comment: Dealing with multimapped reads with Chip-seq and ATAC-seq data when studying Tra
23 months ago by kalavattam ▴ 350
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0
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3.1k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.1 years ago by kalavattam ▴ 350
0
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0
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3.1k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.1 years ago by kalavattam ▴ 350
0
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0
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3.1k
views
Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.1 years ago by kalavattam ▴ 350
0
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1
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3.1k
views
Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.1 years ago by kalavattam ▴ 350
0
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1
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3.1k
views
Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.1 years ago by kalavattam ▴ 350
6
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17
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3.1k
views
MacOS Quicklook plugin for gtf and gff3 files?
gtf gff3 MacOS
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 350
0
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1
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3.1k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.1 years ago by kalavattam ▴ 350
0
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1
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3.1k
views
Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.1 years ago by kalavattam ▴ 350
0
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1
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3.1k
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Comment: Comment: MacOS Quicklook plugin for gtf and gff3 files?
2.1 years ago by kalavattam ▴ 350
0
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0
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2.2k
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Comment: Comment: On "wings" in volcano plots...
2.1 years ago by kalavattam ▴ 350
0
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3
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2.2k
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Comment: Comment: On "wings" in volcano plots...
2.1 years ago by kalavattam ▴ 350
7
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6
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2.2k
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On "wings" in volcano plots...
DEG volcano DGE statistics DE
updated 2.1 years ago by 88k • written 2.1 years ago by ▴ 350
0
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0
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1.3k
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Comment: Comment: How much resources does HiCanu need to assemble PacBio sequence
2.2 years ago by kalavattam ▴ 350
0
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0
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33k
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Comment: Comment: Bowtie2 parameters for best alignment
2.2 years ago by kalavattam ▴ 350
1
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0
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549
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Split RNA-seq bam by strand: normalize before or after split?
strand forward RNA-seq bam reverse
2.6 years ago by kalavattam ▴ 350
0
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0
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3.9k
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Answer: Answer: Merge STAR Log.final.out files together
2.9 years ago by kalavattam ▴ 350
0
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1
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2.1k
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Comment: Comment: Mapping reads using kallisto - rna seq analysis
2.9 years ago by kalavattam ▴ 350
0
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0
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1.3k
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Comment: Comment: Reference Annotation GTF that includes piRNAs?
2.9 years ago by kalavattam ▴ 350
0
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1
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1.3k
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Comment: Comment: Reference Annotation GTF that includes piRNAs?
2.9 years ago by kalavattam ▴ 350
0
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1
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2.1k
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Comment: Comment: Mapping reads using kallisto - rna seq analysis
2.9 years ago by kalavattam ▴ 350
0
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0
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2.0k
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Comment: Comment: Quick way to get a field such as QNAME from the last read in a bam file?
22 months ago by kalavattam ▴ 350
0
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1
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2.0k
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Comment: Comment: Quick way to get a field such as QNAME from the last read in a bam file?
3.0 years ago by kalavattam ▴ 350
0
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1
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2.0k
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Comment: Comment: Quick way to get a field such as QNAME from the last read in a bam file?
3.0 years ago by kalavattam ▴ 350
2
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6
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2.0k
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Quick way to get a field such as QNAME from the last read in a bam file?
bam samtools
22 months ago by kalavattam ▴ 350
2
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1
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1.3k
views
Fast way to use Samtools to sort a BAM file by queryname similar to `picard SortSam SORT_ORDER=queryname`?
samtools bam picard
7 months ago by kalavattam ▴ 350
0
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0
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12k
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Comment: Comment: How does salmon deal with decoy?
3.1 years ago by kalavattam ▴ 350
0
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0
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1.8k
views
Comment: Comment: How to remove Mate mapped to a different chromosome
3.2 years ago by kalavattam ▴ 350
114 results • Page 2 of 3
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