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16
votes
11
replies
9.0k
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DESeq2 design with multiple conditions
DESeq2
updated 23 months ago by 44k • written 5.3 years ago by ▴ 250
0
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0
replies
793
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Comment: Comment: error running popularvote - popv
2.4 years ago by maria2019 ▴ 250
0
votes
1
reply
793
views
error running popularvote - popv
TabulaSapiens popularVote popv celllabeling
2.4 years ago by maria2019 ▴ 250
6
votes
10
replies
7.2k
views
7 follow
Strange MT% in 10X scRNA-seq data analysis
Seurat 10X scRNA-seq MT%
updated 2.8 years ago by • 0 • written 5.6 years ago by ▴ 250
0
votes
2
replies
1.0k
views
how to add a config file to docker
docker container offtopic
updated 2.9 years ago by 44k • written 2.9 years ago by ▴ 250
0
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0
replies
1.7k
views
Comment: Comment: Including tbi file along with VCF when running VEP on remote dataset (GnomadV3)
3.0 years ago by maria2019 ▴ 250
0
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1
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1.7k
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Comment: Comment: Including tbi file along with VCF when running VEP on remote dataset (GnomadV3)
3.0 years ago by maria2019 ▴ 250
0
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0
replies
1.8k
views
Comment: Comment: How to iterate over all elements of a dataframe and make changes based on a func
3.0 years ago by maria2019 ▴ 250
1
vote
4
replies
1.7k
views
Including tbi file along with VCF when running VEP on remote dataset (GnomadV3)
VCF VEP gnomad annotation
3.0 years ago by maria2019 ▴ 250
2
votes
6
replies
1.8k
views
How to iterate over all elements of a dataframe and make changes based on a function
function R datafram
3.0 years ago by maria2019 ▴ 250
0
votes
0
replies
1.8k
views
Comment: Comment: How to iterate over all elements of a dataframe and make changes based on a func
updated 3.0 years ago by 13k • written 3.0 years ago by ▴ 250
0
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1
reply
1.8k
views
Comment: Comment: How to iterate over all elements of a dataframe and make changes based on a func
3.0 years ago by maria2019 ▴ 250
0
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0
replies
7.6k
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Comment: Comment: Using VEP to get gnomAD frequencies
3.0 years ago by maria2019 ▴ 250
0
votes
2
replies
7.6k
views
Comment: Comment: Using VEP to get gnomAD frequencies
updated 3.0 years ago by 44k • written 3.0 years ago by ▴ 250
0
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0
replies
1.0k
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Comment: Comment: Adding new samples to single cell rna-seq analysis
3.6 years ago by maria2019 ▴ 250
1
vote
2
replies
1.0k
views
Adding new samples to single cell rna-seq analysis
batch scRNA-seq seurat
3.6 years ago by maria2019 ▴ 250
0
votes
1
reply
3.0k
views
How to chose best ligand option based on affinity and RMSD from Autodock vina docking results?
RMSD Autodock vina docking binding affinity ligand
updated 4.3 years ago by ▴ 10 • written 4.4 years ago by ▴ 250
0
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0
replies
1.0k
views
Why Grid centers are different between Glide and ADTvina for the same Ligand-protein structures
docking vina glide grid Autodock vina
4.4 years ago by maria2019 ▴ 250
0
votes
0
replies
1.1k
views
Comment: C: how to analyze/integrate methylation "beta value" and RNA-seq "FPKM" data from o
4.4 years ago by maria2019 ▴ 250
1
vote
2
replies
1.1k
views
how to analyze/integrate methylation "beta value" and RNA-seq "FPKM" data from only one cell line
omics integration RNA-seq FPKM beta value
4.4 years ago by maria2019 ▴ 250
1
vote
1
reply
1.8k
views
Which journals accept molecular docking analysis using Autodock vina
autodock vina molecular docking ligand journal
updated 4.7 years ago by ★ 28k • written 4.7 years ago by ▴ 250
0
votes
0
replies
1.7k
views
Comment: C: Zinc data base drug ID to drug name convertor
4.7 years ago by maria2019 ▴ 250
1
vote
2
replies
1.7k
views
Zinc data base drug ID to drug name convertor
ID to name Zinc database drug name
updated 4.7 years ago by ★ 28k • written 4.7 years ago by ▴ 250
0
votes
1
reply
969
views
how to get methylated fragments (CpG regions) for only ONE sample using DMAP
Dmap DMR methylation CpG
updated 2.9 years ago by ▴ 130 • written 4.8 years ago by ▴ 250
2
votes
3
replies
2.5k
views
Why the PCA results of PCASamples() from methylkit is different from prcomp()?
methylkit prcomp pca PCASamples multiplePCA
updated 7 months ago by ★ 1.2k • written 4.8 years ago by ▴ 250
2
votes
1
reply
2.5k
views
Answer: A: Why the PCA results of PCASamples() from methylkit is different from prcomp()?
4.8 years ago by maria2019 ▴ 250
1
vote
0
replies
3.0k
views
Comment: C: How to generate CpG REGIONs file to run DMR analysis with methylkit?
4.8 years ago by maria2019 ▴ 250
3
votes
2
replies
3.0k
views
How to generate CpG REGIONs file to run DMR analysis with methylkit?
DMR methylkit CpG-regions RRBS
updated 4.9 years ago by 8.3k • written 4.9 years ago by ▴ 250
0
votes
1
reply
11k
views
Comment: C: How to plot 2 different shapes in 3D PCA plots generated by rgl plot3D
4.9 years ago by maria2019 ▴ 250
0
votes
0
replies
11k
views
Comment: C: How to plot 2 different symbols in a 3D PCA plot generated by rgl-plot3D
4.9 years ago by maria2019 ▴ 250
1
vote
4
replies
11k
views
How to plot 2 different symbols in a 3D PCA plot generated by rgl-plot3D
3D_PCA rgl plot3D rna-seq
4.9 years ago by maria2019 ▴ 250
2
votes
0
replies
5.7k
views
Comment: A: Why do I get different results for PC1 from plotPCA(DESeq2) and prcomp?
4.9 years ago by maria2019 ▴ 250
14
votes
5
replies
5.7k
views
Why do I get different results for PC1 from plotPCA(DESeq2) and prcomp?
plotPCA deseq2 prcomp PCA
updated 15 days ago by 85k • written 4.9 years ago by ▴ 250
0
votes
0
replies
3.5k
views
Answer: C: What is the best R package to plot eye catching 3D PCA plots?
4.9 years ago by maria2019 ▴ 250
0
votes
2
replies
3.5k
views
What is the best R package to plot eye catching 3D PCA plots?
PCA plot R
4.9 years ago by maria2019 ▴ 250
0
votes
1
reply
1.5k
views
Comment: C: statistics method to find the relation between multiple variables of 50 samples
4.9 years ago by maria2019 ▴ 250
0
votes
1
reply
1.5k
views
Comment: C: statistics method to find the relation between multiple variables of 50 samples
4.9 years ago by maria2019 ▴ 250
0
votes
0
replies
1.5k
views
Comment: C: statistics method to find the relation between multiple variables of 50 samples
4.9 years ago by maria2019 ▴ 250
0
votes
1
reply
1.5k
views
Comment: C: statistics method to find the relation between multiple variables of 50 samples
4.9 years ago by maria2019 ▴ 250
0
votes
1
reply
1.5k
views
Comment: C: statistics method to find the relation between multiple variables of 50 samples
4.9 years ago by maria2019 ▴ 250
3
votes
13
replies
1.5k
views
statistics method to find the relation between multiple variables of 50 samples
statistics
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 250
1
vote
2
replies
933
views
Is it logical to compare the expression FPKM with the percent methylation data at genes?
RNA-Seq methylation expression-methylation counts
4.9 years ago by maria2019 ▴ 250
0
votes
0
replies
933
views
Comment: C: Is it logical to compare the expression FPKM with the percent methylation data a
4.9 years ago by maria2019 ▴ 250
0
votes
0
replies
1.1k
views
Integration analysis of atac-seq, rna-seq, and methylation data at specific gene regions
atac-seq RNA-Seq methylation Integration_Analysis
4.9 years ago by maria2019 ▴ 250
5
votes
2
replies
1.3k
views
How to plot gene_names besides CpGs in microarray methylation heatmap?
limma Differential CpG microarray heatmap.2
4.9 years ago by maria2019 ▴ 250
2
votes
1
reply
934
views
How to calculate methylation FC for genes based on CpG FC data?
methylation fold-change
updated 4.9 years ago by 104k • written 4.9 years ago by ▴ 250
1
vote
0
replies
1.3k
views
Comment: C: How to remove spike ins from illumina beadchip data
4.9 years ago by maria2019 ▴ 250
4
votes
2
replies
1.3k
views
How to remove spike ins from illumina beadchip data
microarray limma beadchip illumina ERCC
updated 4.9 years ago by 88k • written 4.9 years ago by ▴ 250
4
votes
2
replies
1.2k
views
Error in inputting multiple illumina microarray idat files to limma
R idat limma microarray
updated 4.9 years ago by ★ 7.7k • written 5.0 years ago by ▴ 250
0
votes
1
reply
1.6k
views
Comment: C: RRBS analysis using methylkit with 2 variables
5.1 years ago by maria2019 ▴ 250
91 results • Page 1 of 2
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