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0
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873
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Comment: Comment: should remove unassigned genera in 16S rRNA sequencing analysis
17 months ago by zhangdengwei ▴ 210
0
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2
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873
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should remove unassigned genera in 16S rRNA sequencing analysis
16S rRNA metagenomics sequencing
17 months ago by zhangdengwei ▴ 210
1
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0
replies
475
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Alternative approach to rarefying in 16S rRNA analysis
16S Rarefying rRNA
19 months ago by zhangdengwei ▴ 210
0
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0
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1.0k
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Comment: Comment: too many zeros in 16S rRNA amplicon sequencing data
19 months ago by zhangdengwei ▴ 210
0
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2
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1.0k
views
too many zeros in 16S rRNA amplicon sequencing data
16S rRNA
19 months ago by zhangdengwei ▴ 210
0
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0
replies
446
views
Align shotgun metagenomics to reference protein database
reference protein metagenome database paladin
20 months ago by zhangdengwei ▴ 210
0
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0
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838
views
Comment: Comment: how to iteratively search sequences against sequence database using profile HMM
22 months ago by zhangdengwei ▴ 210
1
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2
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838
views
how to iteratively search sequences against sequence database using profile HMM
protein pHMM
22 months ago by zhangdengwei ▴ 210
0
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0
replies
953
views
Comment: Comment: how to evaluate a small increase in AUC
2.6 years ago by zhangdengwei ▴ 210
1
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2
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953
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how to evaluate a small increase in AUC
learning AUC machine
2.6 years ago by zhangdengwei ▴ 210
3
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4
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2.7k
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a problem while using fastq-dump to split SRR files
software error
updated 3.0 years ago by ▴ 10 • written 5.8 years ago by ▴ 210
0
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0
replies
748
views
got error "need larger value of 'ncol' as pivoting occurred" when using adonis2
PERMANOVA adonis2
3.1 years ago by zhangdengwei ▴ 210
0
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2
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891
views
easy way to fetch out the surrounding CDS of a pair of given coordinates
GFF
3.3 years ago by zhangdengwei ▴ 210
0
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0
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891
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Comment: Comment: easy way to fetch out the surrounding CDS of a pair of given coordinates
3.3 years ago by zhangdengwei ▴ 210
0
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0
replies
859
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Comment: Comment: fetch out common/conserved genes from a bunch of bacteria species
3.3 years ago by zhangdengwei ▴ 210
0
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2
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859
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fetch out common/conserved genes from a bunch of bacteria species
common analysis genes comparative
3.3 years ago by zhangdengwei ▴ 210
0
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0
replies
421
views
how to assign novel multilocus sequence type
microbioloy
3.6 years ago by zhangdengwei ▴ 210
0
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0
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1.5k
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Answer: Answer: How to obtain compile core gene sequences from Roary?
3.7 years ago by zhangdengwei ▴ 210
0
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5
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2.2k
views
few genes were annotated to GO terms using online eggnog-mapper
GO KEGG eggnog-mapper
updated 3.8 years ago by 20 • written 3.9 years ago by ▴ 210
0
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1
reply
2.2k
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Comment: C: few genes were annotated to GO terms using online eggnog-mapper
3.9 years ago by zhangdengwei ▴ 210
0
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1
reply
10k
views
Is it normal that nearly all of p-value is equal to 0.1 in PERMANOVA analysis
PERMANOVA statistics metagenomics
updated 4.0 years ago by • 0 • written 5.0 years ago by ▴ 210
0
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0
replies
851
views
how to do the parametric trend analysis in R
trend analysis parametric R
4.1 years ago by zhangdengwei ▴ 210
0
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0
replies
1.1k
views
Comment: C: error when running Mauve to re-order contigs
4.2 years ago by zhangdengwei ▴ 210
0
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2
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1.1k
views
error when running Mauve to re-order contigs
comparative genome Mauve genome assembly
updated 4.2 years ago by • 0 • written 4.6 years ago by ▴ 210
0
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0
replies
923
views
how to select reference when constructing a SNP-based phylogenetic tree
phylogenetic tree SNP
4.2 years ago by zhangdengwei ▴ 210
0
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0
replies
818
views
predict plasmid from bacterial WGS
WGS bacteria plasmid chromosome
4.3 years ago by zhangdengwei ▴ 210
0
votes
1
reply
893
views
how to trust the taxa profile annotated by different softwares
metagenome taxa annotation metaphlan3 kraken2
4.3 years ago by zhangdengwei ▴ 210
0
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0
replies
1.5k
views
how to get the log file of pip in Conda
pip Conda
4.3 years ago by zhangdengwei ▴ 210
0
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0
replies
7.1k
views
Comment: A: how to get the installation history of conda
4.3 years ago by zhangdengwei ▴ 210
2
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4
replies
7.1k
views
how to get the installation history of conda
conda
4.3 years ago by zhangdengwei ▴ 210
0
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0
replies
7.1k
views
Comment: C: how to get the installation history of conda
4.3 years ago by zhangdengwei ▴ 210
0
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1
reply
1.4k
views
Comment: C: what's the best Kmer should be set when assembling bacteria genome
4.3 years ago by zhangdengwei ▴ 210
3
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4
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1.4k
views
what's the best Kmer should be set when assembling bacteria genome
genome assembly Kmer
4.3 years ago by zhangdengwei ▴ 210
0
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0
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1.2k
views
how to obtain the abundance of superclass pathway of MetaCyc when using humann2 to do function analysis
humann2 MetaCyc pathway
4.4 years ago by zhangdengwei ▴ 210
0
votes
0
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639
views
compare the plamids of two bacteria
comparative genome plamids bateria
4.4 years ago by zhangdengwei ▴ 210
0
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0
replies
2.6k
views
Comment: C: How to determine contig taxonomy from metagenome?
4.4 years ago by zhangdengwei ▴ 210
1
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0
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4.3k
views
Answer: A: How to change the size of the nodes in Cytoscape according to their relative abu
4.4 years ago by zhangdengwei ▴ 210
3
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1
reply
2.6k
views
Answer: A: How to determine contig taxonomy from metagenome?
4.4 years ago by zhangdengwei ▴ 210
0
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2
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2.6k
views
Comment: C: what's meaning of parameter "-t rel_ab_w_read_stats"
4.5 years ago by zhangdengwei ▴ 210
0
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0
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1.8k
views
Comment: C: how to annotate draft genome
4.5 years ago by zhangdengwei ▴ 210
2
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6
replies
1.8k
views
how to annotate draft genome
contigs bacteria draft genome
updated 4.5 years ago by 3.8k • written 4.5 years ago by ▴ 210
0
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1
reply
1.8k
views
Comment: C: how to annotate draft genome
4.5 years ago by zhangdengwei ▴ 210
0
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1
reply
2.1k
views
Comment: C: bootstraped spearman correlation in R
4.5 years ago by zhangdengwei ▴ 210
3
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3
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2.1k
views
bootstraped spearman correlation in R
spearman correlation bootstraped spearmanRho
updated 4.5 years ago by 35k • written 4.5 years ago by ▴ 210
0
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2
replies
1.4k
views
Significantly different number of reads between two paired files when runing kneaddata
kneaddata metagenomics remove host reads
updated 4.5 years ago by 20 • written 4.6 years ago by ▴ 210
0
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1
reply
8.2k
views
Comment: C: meaning of CheckM output
4.5 years ago by zhangdengwei ▴ 210
0
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0
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8.2k
views
Comment: C: meaning of CheckM output
4.5 years ago by zhangdengwei ▴ 210
2
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4
replies
8.2k
views
meaning of CheckM output
genome assembly CheckM Contigs
updated 4.5 years ago by 10k • written 4.5 years ago by ▴ 210
0
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0
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2.2k
views
Comment: C: which better for the prediction of 16s rRNA
4.6 years ago by zhangdengwei ▴ 210
5
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2
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2.2k
views
which better for the prediction of 16s rRNA
16s rRNA sequence prediction
updated 4.6 years ago by ★ 28k • written 4.6 years ago by ▴ 210
104 results • Page 1 of 3
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