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What are the disadvantages of increasing the sequencing depth of RNA-seq experiment?
NGS RNA-Seq sequencing depth transcriptome
3.7 years ago by mrj ▴ 180
0
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1.9k
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Comment: Comment: is quality evaluation of transcriptome assembly still required if my workflow is
3.7 years ago by mrj ▴ 180
2
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2
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1.9k
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is quality evaluation of transcriptome assembly still required if my workflow is (good quality reads (fastp) -> bowtie2 alignment to reference genome…
RNA-seq transcriptome
updated 3.7 years ago by 147k • written 3.7 years ago by ▴ 180
1
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1
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913
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Is genome coverage same as k-mer coverage for that genome?
genome coverage k-mer coverage
4.4 years ago by mrj ▴ 180
0
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0
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1.2k
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Comment: C: reorder contigs into scaffold?
4.4 years ago by mrj ▴ 180
2
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2
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1.2k
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reorder contigs into scaffold?
contig scaffold Assembly
updated 4.4 years ago by ▴ 240 • written 4.4 years ago by ▴ 180
0
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1
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931
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How to interpret a contig statistics table?
Assembly WGS N50 contigs Soapdenovo2
4.4 years ago by mrj ▴ 180
0
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0
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1.9k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.8 years ago by mrj ▴ 180
0
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1
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1.9k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.8 years ago by mrj ▴ 180
0
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0
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1.9k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.8 years ago by mrj ▴ 180
0
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0
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1.9k
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Comment: C: How to blastn a very short query sequence? Identifying telomeres in assembly
4.8 years ago by mrj ▴ 180
0
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0
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920
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Comment: C: How to detect different chromosomes from whole genome NGS reads of a fungi?
4.8 years ago by mrj ▴ 180
1
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2
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920
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How to detect different chromosomes from whole genome NGS reads of a fungi?
NGS scaffolds Assembly genome alignment
updated 4.8 years ago by ★ 3.8k • written 4.8 years ago by ▴ 180
4
votes
11
replies
1.9k
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How to blastn a very short query sequence? Identifying telomeres in assembly
blastn blast shortquery telomere
updated 4.8 years ago by ▴ 20 • written 4.8 years ago by ▴ 180
5
votes
6
replies
1.5k
views
How to get a list of snp associated with any known cancer from NCBI with chromosomal locations?
SNP Cancer NCBI circos circularGenome
updated 4.9 years ago by ★ 1.2k • written 5.1 years ago by ▴ 180
0
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2
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2.1k
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What are Metatranscriptomics databases?
metatranscriptomics metagenomics databases
updated 4.9 years ago by 3.8k • written 4.9 years ago by ▴ 180
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0
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1.5k
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Comment: C: How to get a list of snp associated with any known cancer from NCBI with chromos
5.0 years ago by mrj ▴ 180
1
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0
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2.2k
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Comment: C: How do I extract out ITS region from assembled whole genome sequence of a fungi?
5.6 years ago by mrj ▴ 180
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