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17
votes
8
replies
39k
views
8 follow
How to read vcf file in python?
vcf
reader
python
updated 22 months ago by
BCArg
▴ 90 • written 4.9 years ago by
ja4123
▴ 30
2
votes
5
replies
1.3k
views
How to convert fastq to BAM
fastq
bam
updated 2.6 years ago by
cmdcolin
★ 4.0k • written 2.6 years ago by
ja4123
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: CNV - Copy number variations. Which tool is most used for?
2.7 years ago by
ja4123
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: CNV - Copy number variations. Which tool is most used for?
2.7 years ago by
ja4123
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: CNV - Copy number variations. Which tool is most used for?
2.7 years ago by
ja4123
▴ 30
4
votes
7
replies
1.3k
views
CNV - Copy number variations. Which tool is most used for?
number
variations
CNV
Copy
updated 2.7 years ago by
Kevin Blighe
88k • written 2.7 years ago by
ja4123
▴ 30
0
votes
0
replies
1.2k
views
Comment:
Comment: Trimmomatic usage based on input data
2.7 years ago by
ja4123
▴ 30
0
votes
1
reply
1.2k
views
Comment:
Comment: Trimmomatic usage based on input data
2.7 years ago by
ja4123
▴ 30
0
votes
1
reply
1.2k
views
Comment:
Comment: Trimmomatic usage based on input data
2.7 years ago by
ja4123
▴ 30
0
votes
1
reply
1.2k
views
Comment:
Comment: Trimmomatic usage based on input data
2.7 years ago by
ja4123
▴ 30
0
votes
0
replies
3.9k
views
Comment:
Comment: Bowtie2 and Hisat2 which tool should I use?
2.7 years ago by
ja4123
▴ 30
9
votes
2
replies
3.9k
views
Bowtie2 and Hisat2 which tool should I use?
alignment
Bowtie2
Hisat2
2.7 years ago by
ja4123
▴ 30
4
votes
7
replies
1.2k
views
Trimmomatic usage based on input data
Trimmomatic
filtering
updated 2.7 years ago by
GenoMax
148k • written 2.7 years ago by
ja4123
▴ 30
6
votes
4
replies
1.0k
views
Can someone could recommend some article (code and files included) related to alcoholic disease on any grounds?
alcoholic
tumor
updated 2.7 years ago by
Mensur Dlakic
★ 28k • written 2.7 years ago by
ja4123
▴ 30
0
votes
1
reply
1.0k
views
Comment:
Comment: Can someone could recommend some article (code and files included) related to a
2.7 years ago by
ja4123
▴ 30
1
vote
2
replies
1.2k
views
How to calculate LogFC? [gene expression matrix]?
gene
expression
LogFC
updated 2.8 years ago by
ATpoint
86k • written 2.8 years ago by
ja4123
▴ 30
0
votes
0
replies
2.9k
views
Comment:
Comment: How to count gene expression level in R?
3.3 years ago by
ja4123
▴ 30
0
votes
1
reply
2.9k
views
Comment:
Comment: How to count gene expression level in R?
3.3 years ago by
ja4123
▴ 30
0
votes
1
reply
2.9k
views
Comment:
Comment: How to count gene expression level in R?
3.3 years ago by
ja4123
▴ 30
0
votes
0
replies
2.9k
views
Comment:
Comment: How to count gene expression level in R?
3.3 years ago by
ja4123
▴ 30
0
votes
0
replies
2.9k
views
Comment:
Comment: How to count gene expression level in R?
3.3 years ago by
ja4123
▴ 30
0
votes
1
reply
2.9k
views
Comment:
Comment: How to count gene expression level in R?
3.3 years ago by
ja4123
▴ 30
1
vote
1
reply
2.9k
views
Comment:
Comment: How to count gene expression level in R?
3.3 years ago by
ja4123
▴ 30
7
votes
14
replies
2.9k
views
How to count gene expression level in R?
expression
seurat
r
gene
bioconductor
3.3 years ago by
ja4123
▴ 30
4
votes
2
replies
1.2k
views
scRNA-seq data analysis - R
scRNA-seq
R
updated 3.3 years ago by
ATpoint
86k • written 3.3 years ago by
ja4123
▴ 30
0
votes
0
replies
995
views
Comment:
Comment: Snakefile - problem with too many outputs
3.5 years ago by
ja4123
▴ 30
0
votes
3
replies
995
views
Snakefile - problem with too many outputs
snakemake
snakefile
updated 3.5 years ago by
liorglic
★ 1.5k • written 3.5 years ago by
ja4123
▴ 30
0
votes
0
replies
628
views
Flexibility of protein (ProtParam module from biopython)
biopython
Flexibility
3.6 years ago by
ja4123
▴ 30
0
votes
0
replies
2.5k
views
Comment:
Comment: How to extract information about which chromosome it is, from bam file using pys
3.6 years ago by
ja4123
▴ 30
0
votes
2
replies
2.5k
views
Comment:
Comment: How to extract information about which chromosome it is, from bam file using pys
3.6 years ago by
ja4123
▴ 30
0
votes
0
replies
2.5k
views
Comment:
Comment: How to extract information about which chromosome it is, from bam file using pys
3.6 years ago by
ja4123
▴ 30
2
votes
6
replies
2.5k
views
How to extract information about which chromosome it is, from bam file using pysam?
pysam
bam
updated 3.6 years ago by
cpad0112
21k • written 3.6 years ago by
ja4123
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: How to download via biopython (proteom or genome) individual or random organisms
3.7 years ago by
ja4123
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: How to download via biopython (proteom or genome) individual or random organisms
3.7 years ago by
ja4123
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: How to download via biopython (proteom or genome) individual or random organisms
3.7 years ago by
ja4123
▴ 30
3
votes
7
replies
1.5k
views
How to download via biopython (proteom or genome) individual or random organisms?
genom
proteom
updated 3.7 years ago by
GenoMax
148k • written 3.7 years ago by
ja4123
▴ 30
0
votes
0
replies
1.6k
views
Comment:
C: bedtools intersect usage problem
3.9 years ago by
ja4123
▴ 30
0
votes
1
reply
1.6k
views
Comment:
C: bedtools intersect usage problem
3.9 years ago by
ja4123
▴ 30
0
votes
1
reply
1.6k
views
Comment:
C: bedtools intersect usage problem
3.9 years ago by
ja4123
▴ 30
5
votes
7
replies
1.6k
views
bedtools intersect usage problem
bedtools
intersect
bam
updated 3.9 years ago by
i.sudbery
20k • written 3.9 years ago by
ja4123
▴ 30
1
vote
1
reply
1.3k
views
Files for CHIPseeker analysis
chipseeker
chip-seq
r
3.9 years ago by
ja4123
▴ 30
1
vote
1
reply
856
views
Location of the peaks from CHIP-seq data in the genome
CHIP-seq
macs3
bed
narrowPeak
3.9 years ago by
ja4123
▴ 30
7
votes
1
reply
5.2k
views
How to convert vcf.bgz to vcf.gz?
vcf
gz
bgz
gnomad
updated 4.1 years ago by
Biostar
20 • written 4.9 years ago by
ja4123
▴ 30
0
votes
1
reply
1.7k
views
Comment:
C: Problem succesfully running freebayes
4.9 years ago by
ja4123
▴ 30
2
votes
8
replies
1.7k
views
Problem succesfully running freebayes
freebayes
vcf
fasta
4.9 years ago by
ja4123
▴ 30
0
votes
0
replies
1.7k
views
Comment:
C: Problem succesfully running freebayes
4.9 years ago by
ja4123
▴ 30
0
votes
0
replies
1.7k
views
Comment:
C: Problem succesfully running freebayes
4.9 years ago by
ja4123
▴ 30
3
votes
1
reply
3.5k
views
File not suitable for fasta index generation.
fasta
index
freebayes
updated 4.9 years ago by
Pierre Lindenbaum
164k • written 4.9 years ago by
ja4123
▴ 30
4
votes
5
replies
3.4k
views
Unable to find FASTA index entry for '1'
freebayes
fasta
vcf
bam
4.9 years ago by
ja4123
▴ 30
0
votes
1
reply
6.1k
views
Comment:
C: HISAT2 Error: Encountered internal HISAT2 exception (#1)
5.0 years ago by
ja4123
▴ 30
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