Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
5
votes
7
replies
3.4k
views
Viewing and editing FASTQ files
fastq RNA-Seq next-gen sequencing alignment
updated 4.2 years ago by 20 • written 5.5 years ago by ▴ 110
2
votes
1
reply
3.7k
views
Filtering specific columns (SAMPLE IDs) in a VCF file using BCFtools
vcf bcf SNP rna-seq software error
5.0 years ago by gprashant17 ▴ 110
0
votes
0
replies
2.1k
views
Comment: C: Filtering out by gene and samples from VCF files
5.1 years ago by gprashant17 ▴ 110
2
votes
2
replies
2.1k
views
Filtering out by gene and samples from VCF files
vcf SNP vcftools gtex gene
updated 5.1 years ago by 164k • written 5.1 years ago by ▴ 110
1
vote
6
replies
2.7k
views
Empty VCF files produced by both Mutect2 and HaplotypeCaller?
SNP haplotype-caller mutect RNA-Seq sequencing
updated 5.4 years ago by 20 • written 5.4 years ago by ▴ 110
1
vote
0
replies
5.0k
views
Comment: C: Filtering significant somatic variants from a VCF file
5.4 years ago by gprashant17 ▴ 110
3
votes
2
replies
5.0k
views
Filtering significant somatic variants from a VCF file
vcf alignment RNA-Seq mutations ngs
5.4 years ago by gprashant17 ▴ 110
2
votes
1
reply
1.8k
views
Where can find we find dbSNP database for Human Genome GRCh38.p12
snp dbSNP RNA-Seq alignment vcf
updated 5.4 years ago by 5.9k • written 5.4 years ago by ▴ 110
1
vote
1
reply
955
views
How to create a mutation landscape from a VCF file?
vcf SNP genome RNA-Seq
5.4 years ago by gprashant17 ▴ 110
1
vote
0
replies
811
views
Reference Index and Feature Index not matching while using BaseRecalibrator
gatk SNP RNA-Seq alignment ngs
5.4 years ago by gprashant17 ▴ 110
0
votes
1
reply
2.7k
views
Comment: C: Empty VCF files produced by both Mutect2 and HaplotypeCaller?
updated 5.4 years ago by 44k • written 5.4 years ago by ▴ 110
0
votes
0
replies
2.7k
views
Comment: C: Empty VCF files produced by both Mutect2 and HaplotypeCaller?
5.4 years ago by gprashant17 ▴ 110
0
votes
1
reply
1.0k
views
Comment: C: MarkDuplicates output file in GATK pipeline
5.5 years ago by gprashant17 ▴ 110
2
votes
3
replies
1.0k
views
MarkDuplicates output file in GATK pipeline
gatk rna-seq alignment bam sequencing
updated 5.5 years ago by 164k • written 5.5 years ago by ▴ 110
0
votes
1
reply
4.5k
views
Comment: C: What are the best set of options to use while aligning using STAR?
5.5 years ago by gprashant17 ▴ 110
1
vote
1
reply
4.5k
views
Comment: C: What are the best set of options to use while aligning using STAR?
5.5 years ago by gprashant17 ▴ 110
15
votes
7
replies
4.5k
views
What are the best set of options to use while aligning using STAR?
STAR RNA-Seq ngs alignment
updated 5.5 years ago by 8.3k • written 5.5 years ago by ▴ 110
0
votes
0
replies
984
views
Comment: C: What are the best tools for analyzing and identifying somatic mutations?
5.5 years ago by gprashant17 ▴ 110
1
vote
2
replies
984
views
What are the best tools for analyzing and identifying somatic mutations?
SNP RNA-Seq sam bam vcf
updated 5.5 years ago by 85k • written 5.5 years ago by ▴ 110
0
votes
1
reply
2.0k
views
Comment: C: Usage of Mutect2
5.5 years ago by gprashant17 ▴ 110
2
votes
4
replies
2.0k
views
Usage of Mutect2
gatk mutect2 SNP next-gen RNA-Seq
updated 5.5 years ago by ★ 1.4k • written 5.5 years ago by ▴ 110
10
votes
1
reply
17k
views
What is Canonical/Non-canonical splicing?
alignment STAR RNA-Seq ngs splicing
updated 5.5 years ago by 27k • written 5.5 years ago by ▴ 110
0
votes
0
replies
3.4k
views
Comment: C: Viewing and editing FASTQ files
5.5 years ago by gprashant17 ▴ 110
0
votes
1
reply
3.4k
views
Comment: C: Viewing and editing FASTQ files
5.5 years ago by gprashant17 ▴ 110
0
votes
1
reply
3.4k
views
Comment: C: Viewing and editing FASTQ files
5.5 years ago by gprashant17 ▴ 110
25 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6