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Comment: C: Get intersection of files occuring in at least 2 files?
5.3 years ago by vctrm67 ▴ 90
1
vote
7
replies
1.8k
views
Get intersection of files occuring in at least 2 files?
bedtools
updated 5.3 years ago by 36k • written 5.3 years ago by ▴ 90
0
votes
8
replies
2.2k
views
Mutect output for CNV calling
cnv
updated 5.3 years ago by 20 • written 5.4 years ago by ▴ 90
0
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1
reply
5.6k
views
Comment: C: Bcftools unsorted positions?
5.3 years ago by vctrm67 ▴ 90
0
votes
7
replies
5.6k
views
Bcftools unsorted positions?
bcftools
5.3 years ago by vctrm67 ▴ 90
0
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1
reply
5.6k
views
Comment: C: Bcftools unsorted positions?
updated 5.3 years ago by 45k • written 5.3 years ago by ▴ 90
4
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4
replies
1.5k
views
Replacing BAM reference
bam
updated 5.3 years ago by 15k • written 5.3 years ago by ▴ 90
0
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1
reply
1.4k
views
CNVKit interpretation of results?
cnvkit
updated 5.4 years ago by ★ 19k • written 5.4 years ago by ▴ 90
0
votes
1
reply
984
views
Comment: C: Annovar produces uncalled mutations?
5.4 years ago by vctrm67 ▴ 90
0
votes
3
replies
984
views
Annovar produces uncalled mutations?
annovar
updated 5.4 years ago by 89k • written 5.4 years ago by ▴ 90
0
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1
reply
2.2k
views
Comment: C: Mutect output for CNV calling
5.4 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.2k
views
Comment: C: Mutect output for CNV calling
5.4 years ago by vctrm67 ▴ 90
0
votes
2
replies
2.2k
views
Comment: C: Mutect output for CNV calling
5.4 years ago by vctrm67 ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Calling CNVs without a normal
5.4 years ago by vctrm67 ▴ 90
0
votes
0
replies
722
views
Eliminating panel mutations based on coverage of PoN
GATK filtering
5.4 years ago by vctrm67 ▴ 90
0
votes
1
reply
797
views
GATK BaseRecalibrator and platform?
gatk
5.4 years ago by vctrm67 ▴ 90
0
votes
1
reply
1.5k
views
Comment: C: Hg19 version based on bam file contigs?
5.4 years ago by vctrm67 ▴ 90
0
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0
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1.5k
views
Comment: C: Hg19 version based on bam file contigs?
5.4 years ago by vctrm67 ▴ 90
1
vote
5
replies
1.5k
views
Hg19 version based on bam file contigs?
hg19
5.4 years ago by vctrm67 ▴ 90
2
votes
6
replies
1.4k
views
Forum: Error in posting to Biostars?
meta
updated 2.0 years ago by 45k • written 5.4 years ago by ▴ 90
3
votes
10
replies
3.8k
views
Illumina WES intervals file for coverage analysis?
illumina
updated 5.4 years ago by ★ 1.9k • written 5.4 years ago by ▴ 90
0
votes
1
reply
1.4k
views
Comment: C: Error in posting to Biostars?
5.4 years ago by vctrm67 ▴ 90
0
votes
1
reply
1.3k
views
Samtools for corrupt bam?
samtools
5.4 years ago by vctrm67 ▴ 90
0
votes
0
replies
3.8k
views
Comment: C: Illumina WES intervals file for coverage analysis?
5.4 years ago by vctrm67 ▴ 90
0
votes
1
reply
3.8k
views
Comment: C: Illumina WES intervals file for coverage analysis?
5.4 years ago by vctrm67 ▴ 90
0
votes
2
replies
3.8k
views
Comment: C: Illumina WES intervals file for coverage analysis?
5.4 years ago by vctrm67 ▴ 90
0
votes
1
reply
3.8k
views
Comment: C: Illumina WES intervals file for coverage analysis?
5.4 years ago by vctrm67 ▴ 90
1
vote
1
reply
2.3k
views
Using Bedtools coverage to find BAM coverage?
bedtools
written 5.6 years ago by ▴ 90
0
votes
0
replies
937
views
Sequenza gives sequence not found error?
sequenza
updated 5.5 years ago by 20 • written 5.7 years ago by ▴ 90
0
votes
1
reply
1.4k
views
Comment: C: Annovar in hg19 mode
5.5 years ago by vctrm67 ▴ 90
0
votes
4
replies
1.4k
views
Annovar in hg19 mode
annovar
5.5 years ago by vctrm67 ▴ 90
0
votes
0
replies
3.6k
views
Comment: C: GATK Interval list for processing mouse genome WGS
5.5 years ago by vctrm67 ▴ 90
0
votes
1
reply
3.6k
views
Comment: A: GATK Interval list for processing mouse genome WGS
5.6 years ago by vctrm67 ▴ 90
0
votes
1
reply
1.9k
views
LiftOver from b37
liftover
updated 5.6 years ago by 166k • written 5.6 years ago by ▴ 90
0
votes
1
reply
2.9k
views
Comment: C: Bcftools concat gives chromosome contiguous error?
5.6 years ago by vctrm67 ▴ 90
0
votes
0
replies
2.9k
views
Comment: C: Bcftools concat gives chromosome contiguous error?
5.6 years ago by vctrm67 ▴ 90
2
votes
5
replies
2.9k
views
Bcftools concat gives chromosome contiguous error?
bcftools
5.6 years ago by vctrm67 ▴ 90
3
votes
1
reply
3.1k
views
Hg38 to b37 LiftOver chain?
picard
5.6 years ago by vctrm67 ▴ 90
0
votes
1
reply
1.8k
views
Using GATK AddOrReplaceReadGroups
GATK
updated 5.6 years ago by 166k • written 5.6 years ago by ▴ 90
0
votes
0
replies
1.2k
views
How to use CNVKit
cnvkit
5.7 years ago by vctrm67 ▴ 90
1
vote
1
reply
768
views
Combine samples in bam/vcf
GATK
updated 5.7 years ago by 166k • written 5.7 years ago by ▴ 90
0
votes
0
replies
1.3k
views
Comment: C: Error when unzipping .gz files from GATK?
5.7 years ago by vctrm67 ▴ 90
0
votes
2
replies
1.3k
views
Error when unzipping .gz files from GATK?
GATK
updated 5.7 years ago by 45k • written 5.7 years ago by ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Combining two VCFs each with own set of mutations
5.7 years ago by vctrm67 ▴ 90
0
votes
3
replies
2.0k
views
Combining two VCFs each with own set of mutations
vcf
updated 5.7 years ago by ★ 19k • written 5.7 years ago by ▴ 90
0
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1
reply
1.8k
views
Comment: C: Comparing calls from different VCFs
5.7 years ago by vctrm67 ▴ 90
2
votes
4
replies
1.8k
views
Comparing calls from different VCFs
vcf maf
5.7 years ago by vctrm67 ▴ 90
0
votes
1
reply
4.2k
views
Comment: C: GATK Best Practices HaplotypeCaller Multi-sample Error
5.7 years ago by vctrm67 ▴ 90
0
votes
2
replies
4.2k
views
Comment: C: GATK Best Practices HaplotypeCaller Multi-sample Error
5.7 years ago by vctrm67 ▴ 90
1
vote
7
replies
4.2k
views
GATK Best Practices HaplotypeCaller Multi-sample Error
GATK HaplotypeCaller
5.7 years ago by vctrm67 ▴ 90
115 results • Page 2 of 3
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