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6
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4
replies
2.2k
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What is the best practice for the analysis of single-cell RNA-seq of mouse and human mixed cells?
single-cell RNA-seq
2.2 years ago by Dan ▴ 180
2
votes
0
replies
2.2k
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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
2.2 years ago by Dan ▴ 180
0
votes
0
replies
1.4k
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Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
2.2 years ago by Dan ▴ 180
0
votes
1
reply
1.4k
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Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
2.2 years ago by Dan ▴ 180
0
votes
2
replies
1.4k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
2.2 years ago by Dan ▴ 180
0
votes
0
replies
1.4k
views
Comment: Comment: Can I directly compare the regions defined by peaks from pair-end 50 and pair-en
2.2 years ago by Dan ▴ 180
0
votes
1
reply
1.4k
views
Comment: Comment: Can I directly compare the peaks from pair-end 50 and pair-end 100 ATAC-seq?
2.2 years ago by Dan ▴ 180
3
votes
10
replies
1.4k
views
Can I directly compare the regions defined by peaks from pair-end 50 and pair-end 100 ATAC-seq?
ATAC-seq
updated 2.2 years ago by 85k • written 2.2 years ago by ▴ 180
0
votes
0
replies
2.2k
views
Comment: Comment: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
2.2 years ago by Dan ▴ 180
5
votes
5
replies
2.0k
views
How to normalize the intensity of bigwig files based on a group of house-keeping genes in ATAC-seq data?
ATAC bigwig
updated 2.2 years ago by 85k • written 2.2 years ago by ▴ 180
0
votes
1
reply
2.0k
views
Comment: Comment: How to normalize the intensity of bigwig files based on a group of house-keeping
2.2 years ago by Dan ▴ 180
0
votes
1
reply
1.1k
views
Comment: Comment: How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
2.3 years ago by Dan ▴ 180
5
votes
3
replies
1.1k
views
How to filter out the promoter-TSS peaks from the `.narrowPeak` file?
awk
updated 2.3 years ago by 4.5k • written 2.3 years ago by ▴ 180
3
votes
1
reply
608
views
How to change the chromosome names of the head line of fasta file?
sed
updated 2.3 years ago by 85k • written 2.3 years ago by ▴ 180
0
votes
0
replies
7.2k
views
Comment: Comment: Convert Granges list of peaks into consensus counts
2.4 years ago by Dan ▴ 180
0
votes
0
replies
2.1k
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Comment: Comment: nextflow error
2.4 years ago by Dan ▴ 180
0
votes
0
replies
7.4k
views
Comment: Comment: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_
2.4 years ago by Dan ▴ 180
14
votes
5
replies
2.1k
views
nextflow error
nextflow
2.4 years ago by Dan ▴ 180
0
votes
0
replies
3.3k
views
Comment: Comment: How to make a TSS enrichment plot in ATAC-seq analysis?
2.4 years ago by Dan ▴ 180
3
votes
3
replies
3.3k
views
How to make a TSS enrichment plot in ATAC-seq analysis?
ATAC
updated 7 months ago by • 0 • written 2.4 years ago by ▴ 180
4
votes
1
reply
638
views
How to define the open chromatin region in ATACseq? And how to filter the .bam file based on insert size?
ATAC
updated 2.4 years ago by 85k • written 2.4 years ago by ▴ 180
2
votes
2
replies
798
views
It is weird there are no reads less than 100 bp in qualimap.
qualimap
2.4 years ago by Dan ▴ 180
2
votes
0
replies
798
views
Answer: Answer: It is weird there are no reads less than 100 bp in qualimap.
2.4 years ago by Dan ▴ 180
0
votes
1
reply
1.1k
views
Comment: Comment: why bowtie2 doesn’t report longer than 500bp inserts?
2.4 years ago by Dan ▴ 180
4
votes
3
replies
1.1k
views
why bowtie2 doesn’t report longer than 500bp inserts?
bowtie2 BAM
updated 2.4 years ago by ▴ 350 • written 2.4 years ago by ▴ 180
3
votes
2
replies
583
views
Is it possible to subsample the especially large files during alignment using Bowtie2 or bwa?
bwa Bowtie2
updated 2.4 years ago by 147k • written 2.4 years ago by ▴ 180
0
votes
0
replies
372
views
How to choose the library normalization size in single cell RNA-seq data Preprocessing?
cell single RNA-seq
2.7 years ago by Dan ▴ 180
0
votes
0
replies
1.4k
views
Comment: Comment: Can I change the mouse symbol gene name to upper case to run GSEA using gmt file
2.7 years ago by Dan ▴ 180
0
votes
2
replies
1.4k
views
Can I change the mouse symbol gene name to upper case to run GSEA using gmt files that contain upper case gene names?
GSEA gmt
2.7 years ago by Dan ▴ 180
0
votes
0
replies
7.2k
views
Comment: Comment: Convert Granges list of peaks into consensus counts
2.7 years ago by Dan ▴ 180
0
votes
0
replies
121k
views
Comment: Comment: How To Split A Bam File By Chromosome
2.7 years ago by Dan ▴ 180
0
votes
1
reply
121k
views
Comment: Comment: How To Split A Bam File By Chromosome
2.7 years ago by Dan ▴ 180
6
votes
2
replies
993
views
Can the input file name be the same as the output file in `samtools sort`?
Samtools
updated 17 months ago by 44k • written 2.8 years ago by ▴ 180
0
votes
0
replies
742
views
How to analyze whole-genome data using Picard and GATK?
whole-genome GATK Picard
2.9 years ago by Dan ▴ 180
3
votes
2
replies
1.4k
views
Which is @RG read group in the head of bam files?
sam bam
2.9 years ago by Dan ▴ 180
0
votes
0
replies
1.4k
views
Comment: Comment: Which is @RG read group in the head of bam files?
2.9 years ago by Dan ▴ 180
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