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0
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1
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8.7k
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Comment:
C: TMM normalisation from RSEM raw counts
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
AW
▴ 350
0
votes
1
reply
8.7k
views
Comment:
C: TMM normalisation from RSEM raw counts
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
AW
▴ 350
0
votes
1
reply
8.7k
views
Comment:
C: TMM normalisation from RSEM raw counts
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
AW
▴ 350
0
votes
1
reply
8.7k
views
Comment:
C: TMM normalisation from RSEM raw counts
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
AW
▴ 350
0
votes
1
reply
8.7k
views
Comment:
C: TMM normalisation from RSEM raw counts
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
AW
▴ 350
0
votes
1
reply
8.7k
views
Comment:
C: TMM normalisation from RSEM raw counts
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
AW
▴ 350
0
votes
1
reply
8.7k
views
Comment:
C: TMM normalisation from RSEM raw counts
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
AW
▴ 350
0
votes
1
reply
8.7k
views
Comment:
A: TMM normalisation from RSEM raw counts
updated 4.9 years ago by
Ram
44k • written 10.5 years ago by
AW
▴ 350
0
votes
0
replies
28k
views
Comment:
C: RNA-seq normalization: How to use TMM and rpkm() in EdgeR
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
AW
▴ 350
0
votes
1
reply
28k
views
Comment:
C: RNA-seq normalization: How to use TMM and rpkm() in EdgeR
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
AW
▴ 350
0
votes
1
reply
3.8k
views
Answer:
A: Extract consensus gene sequence (from gff file) from bam file
updated 5.0 years ago by
Ram
44k • written 9.0 years ago by
AW
▴ 350
0
votes
1
reply
3.7k
views
Comment:
C: samtools Mpileup quality scores?
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
AW
▴ 350
1
vote
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
updated 5.1 years ago by
Ram
44k • written 9.3 years ago by
AW
▴ 350
0
votes
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
updated 5.1 years ago by
Ram
44k • written 9.3 years ago by
AW
▴ 350
0
votes
0
replies
13k
views
Comment:
C: Improving efficiency of awk for large files
updated 5.1 years ago by
Ram
44k • written 9.3 years ago by
AW
▴ 350
0
votes
2
replies
13k
views
Comment:
C: Improving efficiency of awk for large files
updated 5.1 years ago by
Ram
44k • written 9.3 years ago by
AW
▴ 350
1
vote
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
updated 5.1 years ago by
Ram
44k • written 9.3 years ago by
AW
▴ 350
0
votes
3
replies
3.0k
views
VCF format query
vcf
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
AW
▴ 350
1
vote
7
replies
5.2k
views
Mpileup Segmentation Fault
mpileup
updated 5.8 years ago by
Biostar
20 • written 12.2 years ago by
AW
▴ 350
2
votes
7
replies
6.7k
views
Bowtie2 Reads that aligned concordantly exactly 1 time
Bowtie2
SAMtools
updated 21 months ago by
Ram
44k • written 9.6 years ago by
AW
▴ 350
0
votes
0
replies
298k
views
Comment:
C: How To Filter Mapped Reads With Samtools
updated 6.3 years ago by
Ram
44k • written 9.0 years ago by
AW
▴ 350
1
vote
0
replies
2.3k
views
Answer:
A: RSEM ignores quality scores?
7.2 years ago by
AW
▴ 350
1
vote
1
reply
2.3k
views
RSEM ignores quality scores?
RSEM
phred
7.3 years ago by
AW
▴ 350
2
votes
2
replies
5.2k
views
Cufflinks - Assigning Transcripts Or Exons
cufflinks
rna-seq
fpkm
updated 7.3 years ago by
Biostar
20 • written 12.2 years ago by
AW
▴ 350
1
vote
1
reply
3.0k
views
varscan2 mpileup2snp output contains indels
vcf
indels
mpileup2snp
varscan
updated 7.8 years ago by
Biostar
20 • written 8.7 years ago by
AW
▴ 350
0
votes
0
replies
1.4k
views
Varscan mpileup2snp coverage filter
varscan
mpileup2snp
8.1 years ago by
AW
▴ 350
0
votes
0
replies
3.0k
views
Varscan mpileup2snp parameters
varscan
mpileup2snp
snpcalling
8.1 years ago by
AW
▴ 350
0
votes
1
reply
3.3k
views
VCFtools filter - genotype quality score changes
vcftools
genotype quality
GQ
updated 8.2 years ago by
Brice Sarver
★ 3.8k • written 8.2 years ago by
AW
▴ 350
3
votes
3
replies
4.4k
views
How to do consensus calling from bam files
Consensus calling
SNPs
Samtools
BCFtools
updated 8.2 years ago by
Brice Sarver
★ 3.8k • written 8.2 years ago by
AW
▴ 350
1
vote
1
reply
5.0k
views
Answer:
A: HISAT - Stringtie
8.5 years ago by
AW
▴ 350
5
votes
4
replies
5.0k
views
HISAT - Stringtie
RNA-Seq
8.5 years ago by
AW
▴ 350
1
vote
0
replies
5.0k
views
Comment:
C: HISAT - Stringtie
8.5 years ago by
AW
▴ 350
0
votes
0
replies
2.7k
views
vcf format genotypes called
vcf
mpileup2snp
8.7 years ago by
AW
▴ 350
0
votes
4
replies
2.9k
views
SAM file output
sam
bowtie2
DNA-seq
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
AW
▴ 350
0
votes
1
reply
3.0k
views
Comment:
Comment: VCF format query
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
AW
▴ 350
0
votes
2
replies
2.3k
views
Samtools mpileup vcf file
bam
vcf
SNPs
mpileup
samtools
written 9.0 years ago by
AW
▴ 350
0
votes
6
replies
3.8k
views
Extract consensus gene sequence (from gff file) from bam file
bam
DNA-seq
gff
updated 2.3 years ago by
Ram
44k • written 9.0 years ago by
AW
▴ 350
0
votes
0
replies
3.8k
views
Comment:
C: Extract consensus gene sequence (from gff file) from bam file
9.0 years ago by
AW
▴ 350
0
votes
1
reply
3.7k
views
Comment:
C: samtools Mpileup quality scores?
9.1 years ago by
AW
▴ 350
0
votes
6
replies
3.7k
views
samtools Mpileup quality scores?
mpileup
quality-scores
samtools
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
AW
▴ 350
0
votes
0
replies
3.7k
views
Comment:
A: samtools Mpileup quality scores?
9.1 years ago by
AW
▴ 350
15
votes
34
replies
13k
views
Improving efficiency of awk for large files
awk
updated 2.1 years ago by
Ram
44k • written 9.3 years ago by
AW
▴ 350
0
votes
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
9.3 years ago by
AW
▴ 350
1
vote
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
9.3 years ago by
AW
▴ 350
0
votes
0
replies
13k
views
Comment:
C: Improving efficiency of awk for large files
9.3 years ago by
AW
▴ 350
0
votes
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
9.3 years ago by
AW
▴ 350
0
votes
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
9.3 years ago by
AW
▴ 350
0
votes
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
9.3 years ago by
AW
▴ 350
0
votes
1
reply
13k
views
Comment:
C: Improving efficiency of awk for large files
9.3 years ago by
AW
▴ 350
0
votes
0
replies
13k
views
Comment:
C: Improving efficiency of awk for large files
9.3 years ago by
AW
▴ 350
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