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227
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Comment: Comment: split gamp by chromosome or extract specific regions.
4 days ago by Jordan M Eizenga ▴ 640
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586
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
4 days ago by Jordan M Eizenga ▴ 640
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298
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Answer: Answer: fragment size estimation during vg mpmap and rpvg
5 days ago by Jordan M Eizenga ▴ 640
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302
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Answer: Answer: Does vg provides an api?
7 weeks ago by Jordan M Eizenga ▴ 640
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723
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Comment: Comment: question about Varias of graph format. How to get the sequence and source of a
12 weeks ago by Jordan M Eizenga ▴ 640
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0
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401
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Comment: Comment: VG - Verifying presence or absence of variants in Pangenome Graph
3 months ago by Jordan M Eizenga ▴ 640
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1
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401
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Answer: Answer: VG - Verifying presence or absence of variants in Pangenome Graph
3 months ago by Jordan M Eizenga ▴ 640
1
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0
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803
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Comment: Comment: sequenceTubeMap input files
3 months ago by Jordan M Eizenga ▴ 640
1
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1
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678
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
3 months ago by Jordan M Eizenga ▴ 640
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1
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803
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Comment: Comment: sequenceTubeMap input files
3 months ago by Jordan M Eizenga ▴ 640
0
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1
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803
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Comment: Comment: sequenceTubeMap input files
3 months ago by Jordan M Eizenga ▴ 640
1
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1
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803
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Comment: Comment: sequenceTubeMap input files
3 months ago by Jordan M Eizenga ▴ 640
0
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1
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678
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Comment: Comment: advice for visualizing a graph genome constructed by "vg construct"
3 months ago by Jordan M Eizenga ▴ 640
2
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1
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678
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Answer: Answer: advice for visualizing a graph genome constructed by "vg construct"
3 months ago by Jordan M Eizenga ▴ 640
1
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0
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245
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Comment: Comment: Simulating mRNA-seq data using VG - theoretical question
3 months ago by Jordan M Eizenga ▴ 640
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0
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280
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Comment: Comment: compare vg stat scores
3 months ago by Jordan M Eizenga ▴ 640
1
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1
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803
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Comment: Comment: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 640
3
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1
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803
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Answer: Answer: sequenceTubeMap input files
4 months ago by Jordan M Eizenga ▴ 640
1
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0
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356
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Comment: Comment: vg giraffe handling of second vs. supplemental/split alignments, novel SVs, and
4 months ago by Jordan M Eizenga ▴ 640
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1
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1.0k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 640
1
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1
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1.0k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 640
0
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1
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1.0k
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Comment: Comment: Is there a way to quickly calculate the nodes' average coverage of variation gra
5 months ago by Jordan M Eizenga ▴ 640
1
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2
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586
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Comment: Comment: vg autoindex memory issues Signal 6 has occured
5 months ago by Jordan M Eizenga ▴ 640
0
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1
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571
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
5 months ago by Jordan M Eizenga ▴ 640
0
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0
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287
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Comment: Comment: vg giraffe, accept admixed single and paired reads as input
5 months ago by Jordan M Eizenga ▴ 640
1
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1
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571
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Comment: Comment: VG autoindexing error: Chromosome path not found in graph or haplotypes
5 months ago by Jordan M Eizenga ▴ 640
0
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0
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307
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Comment: Comment: Extracting haplotype-specific annotations from splicing graph
5 months ago by Jordan M Eizenga ▴ 640
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0
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366
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Comment: Comment: Vg Call error multiple paths detected using HPRC-GRCH38 ref
5 months ago by Jordan M Eizenga ▴ 640
0
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0
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366
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Comment: Comment: Help with VG Toolkit: VCF Output is Empty
6 months ago by Jordan M Eizenga ▴ 640
1
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0
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878
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
8 months ago by Jordan M Eizenga ▴ 640
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1
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878
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
8 months ago by Jordan M Eizenga ▴ 640
0
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1
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878
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
8 months ago by Jordan M Eizenga ▴ 640
1
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1
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878
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Answer: Answer: Does vg call allow fuzzy match during SV calling?
8 months ago by Jordan M Eizenga ▴ 640
1
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0
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471
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Comment: Comment: Distance index computation during `vg --autoindex` takes too long with one GFA f
9 months ago by Jordan M Eizenga ▴ 640
0
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1
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520
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Comment: Comment: Problem with vg autoindex with phased VCF
10 months ago by Jordan M Eizenga ▴ 640
0
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0
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476
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Comment: Comment: How to split alignment into smaller chunks with node range
10 months ago by Jordan M Eizenga ▴ 640
1
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0
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709
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Comment: Comment: vg sim error: [insert_gbwt_path()] path name already exists:
10 months ago by Jordan M Eizenga ▴ 640
0
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0
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1.2k
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Comment: Comment: vg: How to find node Position and source(sample) ?
10 months ago by Jordan M Eizenga ▴ 640
0
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0
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693
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Answer: Answer: The number of variations in the pan-genome is reduced compared to the variations
11 months ago by Jordan M Eizenga ▴ 640
1
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1
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1.2k
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Answer: Answer: How to find node Postion and source(sample) ?
11 months ago by Jordan M Eizenga ▴ 640
1
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0
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1.6k
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Comment: Comment: need interpretations for the vg call output
12 months ago by Jordan M Eizenga ▴ 640
1
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0
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1.0k
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Answer: Answer: Can I use vg tools to calculate the depth for a bed range file like with samtoo
12 months ago by Jordan M Eizenga ▴ 640
2
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1
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1.4k
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Answer: Answer: vg call - Selecting reference path to call on
12 months ago by Jordan M Eizenga ▴ 640
1
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0
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1.6k
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Answer: Answer: need interpretations for the vg call output
13 months ago by Jordan M Eizenga ▴ 640
0
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1
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1.1k
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Comment: Comment: Lack of correspondance of GFA node IDs to giraffe/call node IDs
13 months ago by Jordan M Eizenga ▴ 640
1
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0
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940
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Comment: Comment: Challenges in Variant Calling and Genotyping with Short-Read Data Mapped to a Pa
13 months ago by Jordan M Eizenga ▴ 640
0
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0
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616
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Answer: Answer: Interpretation question regarding vg call result vcf
13 months ago by Jordan M Eizenga ▴ 640
0
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0
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748
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Comment: Comment: HiFi read alignment with vg giraffe
13 months ago by Jordan M Eizenga ▴ 640
0
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0
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711
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Comment: Comment: Bug of vg surject
14 months ago by Jordan M Eizenga ▴ 640
0
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1
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711
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Comment: Comment: Bug of vg surject
14 months ago by Jordan M Eizenga ▴ 640
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