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Comment: C: HDF5-DIAG: Error in using dsk
3.8 years ago by Rayan Chikhi ★ 1.5k
3
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0
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1.5k
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Answer: A: ENA and SRA fastq files
3.9 years ago by Rayan Chikhi ★ 1.5k
3
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0
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1.4k
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Answer: A: K-mer usage in metagenome assemblies
3.9 years ago by Rayan Chikhi ★ 1.5k
26
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8
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5.5k
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6 follow
Blog: Fast kmer reverse complement code using bit tricks
kmer code reverse-complement gatb
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 1.5k
1
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0
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4.9k
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Answer: A: No could not fit >15 [Assemblied by SOAPdenovo]
updated 4.9 years ago by 44k • written 10.4 years ago by ★ 1.5k
0
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1
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4.9k
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Comment: C: No could not fit >15 [Assemblied by SOAPdenovo]
updated 4.9 years ago by 44k • written 10.4 years ago by ★ 1.5k
0
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1
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7.6k
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Answer: A: Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 1.5k
1
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0
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36k
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Answer: A: Estimating Insert Size From Paired End Data.
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 1.5k
1
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0
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3.1k
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Answer: A: Method used for reducing contigs IonTorrant 400bp [unpaired] (critique/ways to i
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 1.5k
2
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0
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2.2k
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Answer: A: assembly methods and approches
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 1.5k
0
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1
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15k
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Comment: C: Biostar 2.0 released
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 1.5k
0
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1
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4.8k
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Comment: C: How would you write script to count all kmers to estimate the genome size, simil
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.5k
0
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0
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2.4k
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Comment: C: Where does Kmergenie get it's y axis numbers from? Is it suppose to be the local
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.5k
0
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0
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2.3k
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Answer: A: kmer for sample list
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.5k
0
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1
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3.0k
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Comment: C: DiscoSNP++ 2.2.0 Segmentation Fault
updated 5.0 years ago by 44k • written 9.2 years ago by ★ 1.5k
0
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1
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2.2k
views
Answer: A: Problems trying to run simple_test in linux binary distribution
updated 5.0 years ago by 44k • written 9.3 years ago by ★ 1.5k
0
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0
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4.5k
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Comment: C: Problem: kmergenie has a minimum number of input of reads?
updated 5.1 years ago by 44k • written 9.7 years ago by ★ 1.5k
0
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2
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4.5k
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Comment: C: Problem: kmergenie has a minimum number of input of reads?
updated 5.1 years ago by 44k • written 9.7 years ago by ★ 1.5k
0
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0
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4.5k
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Comment: C: Problem: kmergenie has a minimum number of input of reads?
updated 5.1 years ago by 44k • written 9.7 years ago by ★ 1.5k
0
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0
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7.6k
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Comment: C: Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
updated 5.1 years ago by 44k • written 10.7 years ago by ★ 1.5k
0
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1
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7.6k
views
Comment: C: Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
updated 5.1 years ago by 44k • written 10.7 years ago by ★ 1.5k
0
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2
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7.6k
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Answer: A: Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
updated 5.1 years ago by 44k • written 10.7 years ago by ★ 1.5k
0
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1
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1.3k
views
Comment: C: GATB-core kmer couting
5.4 years ago by Rayan Chikhi ★ 1.5k
3
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1
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1.3k
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Answer: A: GATB-core kmer couting
5.4 years ago by Rayan Chikhi ★ 1.5k
0
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0
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10k
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Comment: C: Back Translating Protein Sequence Without Ambiguities...
updated 5.4 years ago by 44k • written 5.8 years ago by ★ 1.5k
0
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0
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1.6k
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Answer: A: Segmentation fault when running Minia v3 with some kmer values
6.3 years ago by Rayan Chikhi ★ 1.5k
1
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1
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1.5k
views
Comment: C: GATB buildNode giving errors
6.3 years ago by Rayan Chikhi ★ 1.5k
2
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2
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1.5k
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Answer: A: GATB buildNode giving errors
6.4 years ago by Rayan Chikhi ★ 1.5k
1
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0
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5.6k
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Comment: C: Want to use fastq-dump to download pacbio data? Read this before
6.5 years ago by Rayan Chikhi ★ 1.5k
2
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0
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4.0k
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Answer: A: Hybrid assembly using MinION data + correction with Illumina. Which strategy to
6.6 years ago by Rayan Chikhi ★ 1.5k
6
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1
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5.6k
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Comment: C: Want to use fastq-dump to download pacbio data? Read this before
6.6 years ago by Rayan Chikhi ★ 1.5k
0
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0
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2.0k
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Comment: C: Minia assembler restart after error?
6.7 years ago by Rayan Chikhi ★ 1.5k
0
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1
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2.0k
views
Comment: C: Minia assembler restart after error?
6.8 years ago by Rayan Chikhi ★ 1.5k
3
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1
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2.0k
views
Answer: A: Minia assembler restart after error?
6.8 years ago by Rayan Chikhi ★ 1.5k
0
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0
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2.1k
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Answer: A: Is there any plant-specific genome assembler?
7.0 years ago by Rayan Chikhi ★ 1.5k
0
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0
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1.6k
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Answer: A: GATB-minia-pipelne fails at bloocoo step
updated 7.0 years ago by 44k • written 7.0 years ago by ★ 1.5k
0
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0
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1.6k
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Answer: A: importing a GFA2 scaffold graph
7.0 years ago by Rayan Chikhi ★ 1.5k
2
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0
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1.4k
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Answer: A: GATB - Multithreaded iteration of paired banks ?
7.0 years ago by Rayan Chikhi ★ 1.5k
1
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0
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1.8k
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Answer: A: compiling gatb-core with external Boost and hdf5
7.1 years ago by Rayan Chikhi ★ 1.5k
0
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0
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1.9k
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Comment: C: Minia stuck - I don't know if my routine is still running
7.2 years ago by Rayan Chikhi ★ 1.5k
0
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0
replies
1.5k
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Answer: A: Error: MPHF is not injective in Minia
7.2 years ago by Rayan Chikhi ★ 1.5k
0
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0
replies
1.5k
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Answer: A: Does Minia discard singletons?
7.2 years ago by Rayan Chikhi ★ 1.5k
2
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0
replies
3.8k
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Comment: C: What's a good PacBio CLR read simulator?
7.7 years ago by Rayan Chikhi ★ 1.5k
0
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1
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1.6k
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Comment: C: One Sided Contig Extension
7.7 years ago by Rayan Chikhi ★ 1.5k
0
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0
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2.5k
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Answer: A: Kmergenie fails to fit models with --diploid settings
7.7 years ago by Rayan Chikhi ★ 1.5k
0
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0
replies
4.0k
views
Answer: A: Kmergenie k-mer estimate and multiple k-mers
7.7 years ago by Rayan Chikhi ★ 1.5k
0
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0
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3.6k
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Comment: C: compiling kmergenie 1.7038. Is it possible?
7.7 years ago by Rayan Chikhi ★ 1.5k
1
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0
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3.6k
views
Answer: A: compiling kmergenie 1.7038. Is it possible?
7.7 years ago by Rayan Chikhi ★ 1.5k
0
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0
replies
3.0k
views
Answer: A: kmergenie Installation failed. seems got a bug
7.7 years ago by Rayan Chikhi ★ 1.5k
0
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0
replies
2.7k
views
Comment: C: No best K value found
7.7 years ago by Rayan Chikhi ★ 1.5k
222 results • Page 1 of 5
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