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Comment: Comment: Graphic representation of distance between samples
2.0 years ago by robert.murphy ▴ 90
0
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1
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1.3k
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Comment: Comment: Genes looking differential abundant are not accoring to DESeq2
2.6 years ago by robert.murphy ▴ 90
6
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7
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1.3k
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Genes looking differential abundant are not accoring to DESeq2
Deseq2 R
updated 2.6 years ago by 101k • written 2.6 years ago by ▴ 90
0
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1
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1.3k
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Comment: Comment: Genes looking differential abundant are not accoring to DESeq2
2.6 years ago by robert.murphy ▴ 90
0
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0
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1.3k
views
Comment: Comment: Genes looking differential abundant are not accoring to DESeq2
2.6 years ago by robert.murphy ▴ 90
6
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10
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16k
views
6 follow
Deseq error : ncol(countData) == nrow(colData) is not TRUE
genome
written 4.8 years ago by ▴ 90
1
vote
1
reply
608
views
Circos.heatmap not displaying zero values in R
visualisation R
2.7 years ago by robert.murphy ▴ 90
1
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0
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608
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Answer: Answer: Circos.heatmap not displaying zero values in R
2.7 years ago by robert.murphy ▴ 90
0
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0
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976
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Comment: Comment: DESeq2 on metagenomic gene abundance data, should I normalize for total sample d
2.8 years ago by robert.murphy ▴ 90
0
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2
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976
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DESeq2 on metagenomic gene abundance data, should I normalize for total sample depth?
Deseq2 metagenome R
2.8 years ago by robert.murphy ▴ 90
0
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0
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527
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EnhancedVolcano selectLab() for custom labels but only those above Pvalue threshold
EnhancedVolcano Deseq2 R
2.8 years ago by robert.murphy ▴ 90
0
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1
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29k
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Comment: Comment: Error: Every gene contains at least one zero, cannot compute log geometric means
2.8 years ago by robert.murphy ▴ 90
5
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3
replies
1.5k
views
Can an enzyme have multiple EC numbers?
hotpep expasy enzyme
updated 2.9 years ago by 15k • written 2.9 years ago by ▴ 90
0
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0
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1.5k
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Comment: Comment: Can an enzyme have multiple EC numbers?
2.9 years ago by robert.murphy ▴ 90
0
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0
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1.5k
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Comment: Comment: What is the best tool to recover nitrogen cycling genes from an annotated assemb
3.0 years ago by robert.murphy ▴ 90
0
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1
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1.5k
views
Comment: Comment: What is the best tool to recover nitrogen cycling genes from an annotated assemb
3.0 years ago by robert.murphy ▴ 90
0
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1
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1.5k
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Comment: Comment: What is the best tool to recover nitrogen cycling genes from an annotated assemb
3.0 years ago by robert.murphy ▴ 90
0
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6
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1.5k
views
What is the best tool to recover nitrogen cycling genes from an annotated assembly?
annotation
3.0 years ago by robert.murphy ▴ 90
0
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0
replies
484
views
How to calculate mapping rate per contig of an assembly scaled by contig length?
assembly alignment metagenome
3.0 years ago by robert.murphy ▴ 90
0
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0
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577
views
How to reintroduce sample divisions to a metagenomic co-assembly, what are the best practices?
coverage assembly metagenomic
3.0 years ago by robert.murphy ▴ 90
0
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0
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563
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Is there any reason to discard singletons after de-hosting metagenomic reads?
alignment metagenome
3.1 years ago by robert.murphy ▴ 90
0
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0
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1.0k
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Comment: Comment: paired reads have different names BWA MEM after samtools bam > fastq
3.1 years ago by robert.murphy ▴ 90
0
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2
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1.0k
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paired reads have different names BWA MEM after samtools bam > fastq
alignment
3.1 years ago by robert.murphy ▴ 90
0
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0
replies
1.4k
views
Comment: Comment: How to get summary statistics out of bbduk.sh ?
3.1 years ago by robert.murphy ▴ 90
0
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0
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2.0k
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Comment: Comment: Should you normalization metagenomic data
3.1 years ago by robert.murphy ▴ 90
0
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1
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1.4k
views
Comment: Comment: How to get summary statistics out of bbduk.sh ?
3.1 years ago by robert.murphy ▴ 90
1
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4
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1.4k
views
How to get summary statistics out of bbduk.sh ?
quallity sequencing control
3.1 years ago by robert.murphy ▴ 90
0
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1
reply
2.0k
views
Comment: Comment: Should you normalization metagenomic data
3.1 years ago by robert.murphy ▴ 90
0
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1
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2.0k
views
Comment: Comment: Should you normalization metagenomic data
3.1 years ago by robert.murphy ▴ 90
5
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6
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2.0k
views
Should you normalization metagenomic data
metagenomic coverage assembly
3.1 years ago by robert.murphy ▴ 90
0
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0
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574
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K-mer coverage of metgenomic data, what is the uper limit of K?
metagenomic coverage
3.1 years ago by robert.murphy ▴ 90
0
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0
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2.2k
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Comment: Comment: Mapping contigs back to samples from co-assembled metagenome.
3.1 years ago by robert.murphy ▴ 90
0
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1
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2.2k
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Comment: Comment: Mapping contigs back to samples from co-assembled metagenome.
3.1 years ago by robert.murphy ▴ 90
0
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1
reply
2.2k
views
Comment: Comment: Mapping contigs back to samples from co-assembled metagenome.
3.1 years ago by robert.murphy ▴ 90
0
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1
reply
2.2k
views
Comment: Comment: Mapping contigs back to samples from co-assembled metagenome.
3.1 years ago by robert.murphy ▴ 90
0
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8
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2.2k
views
Mapping contigs back to samples from co-assembled metagenome.
coassembly
3.1 years ago by robert.murphy ▴ 90
0
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1
reply
1.2k
views
Comment: Comment: Metagenomic assembly, removing redundant contigs.
3.1 years ago by robert.murphy ▴ 90
0
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3
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1.2k
views
Metagenomic assembly, removing redundant contigs.
metagenome assembly
updated 3.1 years ago by 11k • written 3.1 years ago by ▴ 90
0
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0
replies
22k
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Comment: Comment: Why Is Maximum Likelihood Thought To Be The Best Way To Build Phylogenetic Tree?
3.1 years ago by robert.murphy ▴ 90
0
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0
replies
527
views
What would the assortativity of a putative mirobial interaction network tell you in an evological setting?
graphs 16S network
3.2 years ago by robert.murphy ▴ 90
0
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1
reply
1.7k
views
Comment: Comment: Genome assembly, removal of conting below 300 bp?
3.2 years ago by robert.murphy ▴ 90
0
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1
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1.7k
views
Comment: Comment: Genome assembly, removal of conting below 300 bp?
3.2 years ago by robert.murphy ▴ 90
3
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5
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1.7k
views
Genome assembly, removal of conting below 300 bp?
assembly
updated 3.2 years ago by 15k • written 3.2 years ago by ▴ 90
0
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1
reply
4.9k
views
Comment: Comment: What is the correct syntax for BioPythons SeqIO.parse()
3.2 years ago by robert.murphy ▴ 90
4
votes
3
replies
4.9k
views
What is the correct syntax for BioPythons SeqIO.parse()
assembly biopython
updated 3.2 years ago by 8.7k • written 3.2 years ago by ▴ 90
0
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0
replies
1.8k
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Comment: Comment: Whole genome species clustering
3.2 years ago by robert.murphy ▴ 90
0
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2
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945
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Comment: Comment: How to get from annotated sequences to UniProt IDs
3.3 years ago by robert.murphy ▴ 90
1
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4
replies
945
views
How to get from annotated sequences to UniProt IDs
annotation
updated 3.3 years ago by ★ 1.1k • written 3.3 years ago by ▴ 90
0
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0
replies
960
views
Comment: Comment: Combining distance matricies between multiple aligned genes into final distance
3.5 years ago by robert.murphy ▴ 90
0
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0
replies
960
views
Comment: Comment: Combining distance matricies between multiple aligned genes into final distance
3.5 years ago by robert.murphy ▴ 90
181 results • Page 1 of 4
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