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Comment: Comment: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
2.7 years ago by dariober 15k
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978
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Comment: Comment: Single sample vs. a control group in limma
2.7 years ago by dariober 15k
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Answer: Answer: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
2.7 years ago by dariober 15k
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779
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Answer: Answer: pysam rewrite help
2.7 years ago by dariober 15k
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2.2k
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Comment: Comment: Linear regression on RNA-seq data
2.8 years ago by dariober 15k
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2.2k
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Answer: Answer: Linear regression on RNA-seq data
2.8 years ago by dariober 15k
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4.3k
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Comment: Comment: Install required dependencies for GATK4 on remote server without root privilege
2.8 years ago by dariober 15k
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4.3k
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Answer: Answer: Install GATK4 and its dependencies on remote server without root privilege
2.8 years ago by dariober 15k
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1.6k
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Comment: Comment: In RNA-Seq data modeling process, glmfit function in R used raw RNA-Seq count da
2.8 years ago by dariober 15k
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1.7k
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Answer: Answer: MD5Sums of fastq files from SRA
2.8 years ago by dariober 15k
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1.7k
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Answer: Answer: Does the absence of BAI file just cause an algorithm to run slower or would it a
2.8 years ago by dariober 15k
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1
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1.9k
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Comment: Comment: Snakemake error in bwahaha pipeline
2.8 years ago by dariober 15k
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1.9k
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Answer: Answer: Snakemake error in bwahaha pipeline
2.8 years ago by dariober 15k
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1.9k
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Comment: Comment: problem installing ucsc-bedgraphtobigwig
2.8 years ago by dariober 15k
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1.1k
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Comment: Comment: Snakemake error
2.8 years ago by dariober 15k
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1.1k
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Answer: Answer: Snakemake error
2.8 years ago by dariober 15k
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2.1k
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Comment: Comment: how to tell if data was log transformed
2.8 years ago by dariober 15k
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2.1k
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Comment: Comment: Executing snakemake array jobs on cluster
2.8 years ago by dariober 15k
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2.1k
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Answer: Answer: Executing snakemake array jobs on cluster
2.8 years ago by dariober 15k
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1.7k
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Answer: Answer: How does BWA handle duplications?
2.8 years ago by dariober 15k
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1.7k
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Answer: Answer: UMItools dedup deduplication taking too much time + RAM
2.8 years ago by dariober 15k
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1.6k
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Answer: Answer: bamCoverage not generating BigWig output file when using for loop
2.8 years ago by dariober 15k
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1.1k
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Answer: Answer: Prefetch and Snakemake compatibility issue
2.9 years ago by dariober 15k
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1.0k
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Answer: Answer: Performing one-sample t-tests with limma
3.0 years ago by dariober 15k
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2.0k
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Comment: Comment: Keep rows with columns having values between -1 and 1 from a dataframe in R
3.0 years ago by dariober 15k
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8.9k
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Answer: Answer: Gzip output of fasterq-dump
3.0 years ago by dariober 15k
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1.0k
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Answer: Answer: to grep pattern
3.0 years ago by dariober 15k
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1.9k
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Comment: Comment: Help installing Bioawk
3.1 years ago by dariober 15k
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1
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3.4k
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Comment: Comment: M1 Pro/Max and future
3.1 years ago by dariober 15k
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1
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1.9k
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Comment: Comment: wc -l or wc -c which linux command is best to find total read count in fastq fil
3.1 years ago by dariober 15k
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2.2k
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Comment: Comment: Data Manipulation
3.1 years ago by dariober 15k
2
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2.2k
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Answer: Answer: Data Manipulation
3.1 years ago by dariober 15k
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3.8k
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Answer: Answer: SRA Toolkit Error while using prefetch
3.1 years ago by dariober 15k
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1.6k
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Comment: Comment: Is it normal to obtain just a blue line in the "Per base sequence quality module
3.2 years ago by dariober 15k
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1
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1.6k
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Comment: Comment: Is it normal to obtain just a blue line in the "Per base sequence quality module
3.2 years ago by dariober 15k
3
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1
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2.7k
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Answer: Answer: Bedtools: Merging Many Bed Files
3.2 years ago by dariober 15k
8
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2.3k
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Answer: Answer: Germline variant calling pipeline using Snakemake
3.2 years ago by dariober 15k
1
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2.9k
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Comment: Comment: DGE from tumor-adjacent normal pair RNA-seq data. For an individual, no replicat
3.2 years ago by dariober 15k
0
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1
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2.9k
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Comment: Comment: DGE from tumor-adjacent normal pair RNA-seq data. For an individual, no replicat
3.2 years ago by dariober 15k
0
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1
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2.9k
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Answer: Answer: DGE from tumor-adjacent normal pair RNA-seq data. For an individual, no replicat
3.2 years ago by dariober 15k
2
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1
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1.3k
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Answer: Answer: How to write gffutils.feature.Feature object to file
3.2 years ago by dariober 15k
2
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1
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5.5k
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Comment: Comment: Is there a way to convert “dist” to “data.frame”?
3.2 years ago by dariober 15k
1
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1
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3.4k
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Comment: Comment: gffread error
3.2 years ago by dariober 15k
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1
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3.4k
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Comment: Comment: gffread error
3.2 years ago by dariober 15k
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0
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3.9k
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Comment: Comment: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
3.2 years ago by dariober 15k
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1
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3.6k
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Answer: Answer: Is it possible to count lines of fastq.gz file in R ?
3.2 years ago by dariober 15k
3
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1.8k
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Answer: Answer: When running pca with GCTA, why are there the same number of eigenvalues as the
3.2 years ago by dariober 15k
2
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3.6k
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Comment: Comment: Bad volcano plot
3.2 years ago by dariober 15k
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1
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1.1k
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Answer: Answer: Any program to check resources used by Bioinfo Tools
3.3 years ago by dariober 15k
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0
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1.5k
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Comment: Comment: The usage of sed
3.3 years ago by dariober 15k
1,139 results • Page 4 of 23
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