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2
votes
0
replies
4.6k
views
Answer: A: kmer alignment with mismatch
updated 4.9 years ago by 44k • written 8.8 years ago by 15k
0
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1
reply
11k
views
Comment: C: FASTQ Phred33 average base quality score
4.9 years ago by dariober 15k
5
votes
2
replies
28k
views
Answer: A: replace fasta headers with another name in a text file
updated 4.9 years ago by 44k • written 10.5 years ago by 15k
2
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1
reply
5.0k
views
Answer: A: How to merge replicates in bed file, but keep counts of additional columns?
updated 4.9 years ago by 44k • written 10.5 years ago by 15k
3
votes
1
reply
5.7k
views
Answer: A: coverageBed problem: bam contains chromosome while query file does not
updated 4.9 years ago by 44k • written 8.8 years ago by 15k
3
votes
0
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4.1k
views
Answer: A: bedtools coverageBed: not sorted output
updated 4.9 years ago by 44k • written 8.8 years ago by 15k
0
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0
replies
2.9k
views
Answer: A: Normalization factors from DiffBind for browser shots
updated 4.9 years ago by 44k • written 10.5 years ago by 15k
2
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1
reply
5.3k
views
Answer: A: meme text format
updated 4.9 years ago by 44k • written 10.5 years ago by 15k
2
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0
replies
2.4k
views
Answer: A: FAIRE-seq optimal coverage - large genome
updated 4.9 years ago by 44k • written 10.5 years ago by 15k
5
votes
1
reply
13k
views
Answer: A: Calculating N50 in Excel?
updated 4.9 years ago by 44k • written 9.7 years ago by 15k
3
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0
replies
8.4k
views
Answer: A: What to use for a measure of distance between two sequences?
updated 4.9 years ago by 44k • written 10.5 years ago by 15k
4
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1
reply
6.4k
views
Answer: A: finding differentially expressed genes in three arm treatment RNA seq data
updated 4.9 years ago by 44k • written 10.5 years ago by 15k
1
vote
0
replies
3.1k
views
Answer: A: Probability Of Finding A Tri-Nucleotide Motif In A Sequence Of Known Composition
updated 4.9 years ago by 44k • written 10.5 years ago by 15k
1
vote
0
replies
3.5k
views
Comment: C: Help: do I always have to re-open sequence file within a for loop in python?
updated 4.9 years ago by 44k • written 8.8 years ago by 15k
1
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1
reply
7.2k
views
Answer: A: Salvage barcode undetermined reads from Illumina HiSeq 2500 2 x 100 bp pair-ende
updated 4.9 years ago by 44k • written 8.9 years ago by 15k
2
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0
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2.6k
views
Answer: A: Most commonly used scientific software (bioinformatics/analysis/etc)
updated 4.9 years ago by 44k • written 8.9 years ago by 15k
0
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0
replies
3.4k
views
Comment: C: Picard API: Modify sam header
updated 4.9 years ago by 44k • written 10.6 years ago by 15k
0
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2
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5.0k
views
Comment: C: Fast search for many patterns
updated 4.9 years ago by 44k • written 10.6 years ago by 15k
4
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1
reply
5.2k
views
Answer: A: Replace fields CHROM and POS in a vcf file
updated 4.9 years ago by 44k • written 10.6 years ago by 15k
0
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0
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2.6k
views
Answer: A: globaltest in r
updated 4.9 years ago by 44k • written 10.6 years ago by 15k
0
votes
0
replies
9.0k
views
Answer: A: calculating the total length of cDNA for a given gene
updated 4.9 years ago by 44k • written 10.6 years ago by 15k
4
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1
reply
6.1k
views
Answer: A: plotting interactions in R with two data sets
updated 4.9 years ago by 44k • written 10.6 years ago by 15k
0
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1
reply
7.7k
views
Comment: C: TPM or FPKM as input values for PCA and WGCNA?
updated 4.9 years ago by 44k • written 8.9 years ago by 15k
0
votes
2
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3.8k
views
Answer: A: Wolfram mathematica in bioinformatic.
updated 4.9 years ago by 44k • written 8.9 years ago by 15k
1
vote
1
reply
4.5k
views
Comment: C: Do you know of any open source bioinformatics machine learning projects?
updated 4.9 years ago by 44k • written 8.9 years ago by 15k
4
votes
2
replies
4.3k
views
Answer: A: Which Statistics Should Be Applied To Determine Whether A Certain Motif Is Signi
updated 5.0 years ago by 44k • written 10.7 years ago by 15k
0
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0
replies
5.7k
views
Comment: C: Make bam index human readable
updated 5.0 years ago by 44k • written 8.9 years ago by 15k
0
votes
0
replies
5.3k
views
Comment: C: DESeq2: Is dispersion estimation gene-wise or gene- and condition-wise?
updated 5.0 years ago by 44k • written 8.9 years ago by 15k
2
votes
1
reply
6.1k
views
Answer: A: Split bam by multiple chromosome to a single bam file
updated 5.0 years ago by 44k • written 8.9 years ago by 15k
1
vote
1
reply
3.0k
views
Answer: A: PCA of log ratio values
updated 5.0 years ago by 44k • written 8.9 years ago by 15k
0
votes
0
replies
20k
views
Comment: C: How to check if there is any extra space or blank line in the fasta file?
updated 5.0 years ago by 44k • written 8.9 years ago by 15k
1
vote
2
replies
20k
views
Answer: A: How to check if there is any extra space or blank line in the fasta file?
updated 5.0 years ago by 44k • written 8.9 years ago by 15k
0
votes
1
reply
5.6k
views
Answer: A: Reading CRAM files in pysam
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
1
vote
1
reply
2.0k
views
Answer: A: Determine Condition using LogFC values
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
4
votes
1
reply
2.9k
views
Answer: A: Junior bioinformatician skills
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
2
votes
1
reply
5.3k
views
Answer: A: Is it necessary to confirm the RNA-seq results by quantitative RT-PCR?
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
0
votes
0
replies
4.3k
views
Answer: A: How To Have Only Id And Sequence Printed In Output After Parse Sequences From A
updated 5.0 years ago by 44k • written 10.4 years ago by 15k
0
votes
1
reply
24k
views
Comment: C: YA BWA Unique reads, -r, -c options, XA: option on SAM,
updated 5.0 years ago by 44k • written 9.4 years ago by 15k
2
votes
0
replies
5.5k
views
Answer: A: How to read vcf.bgz or vcf.gz in python using PyVcf?
5.0 years ago by dariober 15k
1
vote
0
replies
50k
views
Answer: A: matching and merging data frames of different lengths
updated 5.0 years ago by 44k • written 10.5 years ago by 15k
2
votes
0
replies
4.3k
views
Answer: A: handling PCR duplicate reads ?
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
2
votes
1
reply
2.5k
views
Answer: A: Math backbone in biology/genetics?
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
2
votes
1
reply
7.3k
views
Answer: A: SNPs located in promoter region. OR exon, intron, 5'UTR, 3'UTR
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
3
votes
1
reply
1.6k
views
Comment: C: Getting regexp practice
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
3
votes
1
reply
7.3k
views
Comment: C: Bioinformatics vs. the Climate Crisis
5.0 years ago by dariober 15k
1
vote
0
replies
2.0k
views
Answer: A: Biojava FastaReaderHelper read only 2814 ProteinSequence
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
0
votes
0
replies
12k
views
Comment: C: Get number of variations in a huge VCF using Tabix?
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
1
vote
1
reply
11k
views
Comment: C: Do bioinformaticians often break molecular biologists' hearts by being the first
updated 5.0 years ago by 44k • written 9.0 years ago by 15k
3
votes
1
reply
10.0k
views
Answer: Answer: How to get only rows with values in at least 3 columns?
updated 2.3 years ago by 44k • written 9.1 years ago by 15k
0
votes
0
replies
22k
views
Answer: A: how to rearrange fasta file according to its length
updated 5.0 years ago by 44k • written 9.3 years ago by 15k
1,139 results • Page 7 of 23
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