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6.0k
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Comment: Comment: Conversion Of Alignment Files
8 days ago by cmdcolin ★ 4.0k
2
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0
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340
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Answer: Answer: Visualize and annotate protein domains within a genomic context, given complemen
7 days ago by cmdcolin ★ 4.0k
0
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1
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450
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Comment: Comment: identify transposable elements in iso-seq data
17 days ago by cmdcolin ★ 4.0k
4
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1
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588
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Comment: Comment: The Biostar Herald for Monday, November 04, 2024
18 days ago by cmdcolin ★ 4.0k
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1
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650
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Comment: Comment: Genome Assembly Verification, Chimeric contigs
4 weeks ago by cmdcolin ★ 4.0k
3
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0
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254
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Answer: Answer: Key-value pairs at the end of lines of gaf/paf files
4 weeks ago by cmdcolin ★ 4.0k
0
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1
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549
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Comment: Comment: CpG coordinates information
9 weeks ago by cmdcolin ★ 4.0k
0
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1
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549
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Answer: Answer: CpG coordinates information
10 weeks ago by cmdcolin ★ 4.0k
0
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0
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625
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Comment: Comment: How to check coverage in bam file?
12 weeks ago by cmdcolin ★ 4.0k
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0
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666
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Comment: Comment: Extracting supplementary reads from bam file
3 months ago by cmdcolin ★ 4.0k
3
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1
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666
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Answer: Answer: Extracting supplementary reads from bam file
3 months ago by cmdcolin ★ 4.0k
1
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1
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6.9k
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Comment: Comment: Coverage plot of a complete genome
3 months ago by cmdcolin ★ 4.0k
0
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0
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46k
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Comment: Comment: Get chromosome sizes from fasta file
3 months ago by cmdcolin ★ 4.0k
1
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1
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622
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Comment: Comment: how to effectively pipe chromap into samtools view
3 months ago by cmdcolin ★ 4.0k
2
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1
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622
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Answer: Answer: how to effectively pipe into samtools view
3 months ago by cmdcolin ★ 4.0k
0
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0
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4.0k
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Answer: Answer: Ensembl Api: How To Print All Transcript Isoforms As A Multifasta Alignment
4 months ago by cmdcolin ★ 4.0k
0
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0
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4.0k
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Comment: Comment: Ensembl Api: How To Print All Transcript Isoforms As A Multifasta Alignment
4 months ago by cmdcolin ★ 4.0k
0
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0
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213
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Extract alignment between two samples from a GFA?
graph-genome vg cactus
updated 4 months ago by 44k • written 4 months ago by ★ 4.0k
0
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0
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2.3k
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Comment: Comment: Realigning BAM files to new reference
4 months ago by cmdcolin ★ 4.0k
0
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0
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922
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Comment: Comment: Why is UCSC lift over failing to convert a specific position?
5 months ago by cmdcolin ★ 4.0k
0
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1
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922
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Comment: Comment: Why is UCSC lift over failing to convert a specific position?
5 months ago by cmdcolin ★ 4.0k
1
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1
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922
views
Answer: Answer: Why is UCSC lift over failing to convert a specific position?
5 months ago by cmdcolin ★ 4.0k
1
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1
reply
610
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Comment: Comment: Is T2T genome a "alternate assembly"
5 months ago by cmdcolin ★ 4.0k
0
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1
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494
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Comment: Comment: circlize R package to plot ecDNA
5 months ago by cmdcolin ★ 4.0k
0
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1
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494
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Comment: Comment: circlize R package to plot ecDNA
5 months ago by cmdcolin ★ 4.0k
0
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0
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493
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Comment: Comment: Genomic coordinates in the BioNano VCF
5 months ago by cmdcolin ★ 4.0k
1
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1
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493
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Answer: Answer: Genomic coordinates in the BioNano VCF
5 months ago by cmdcolin ★ 4.0k
0
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0
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547
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Comment: Comment: Minimap2 chimeric reads
5 months ago by cmdcolin ★ 4.0k
0
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0
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514
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Comment: Comment: Tools for chromosomal aneuploidy detection
6 months ago by cmdcolin ★ 4.0k
0
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0
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15k
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Comment: Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
7 months ago by cmdcolin ★ 4.0k
1
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0
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658
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Comment: Comment: Load a full GFF3 into annotation track using arrow (Apollo)
7 months ago by cmdcolin ★ 4.0k
1
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0
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573
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Comment: Comment: Best genome browser for manual curation of gene structure(s)?
7 months ago by cmdcolin ★ 4.0k
3
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1
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573
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Answer: Answer: Best genome browser for manual curation of gene structure(s)?
7 months ago by cmdcolin ★ 4.0k
0
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1
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788
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Answer: Answer: Is it possible to set different tracks to the same scale in JBrowse
7 months ago by cmdcolin ★ 4.0k
0
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0
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1.0k
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Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
0
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1
reply
1.0k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
1
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1
reply
1.0k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
1
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1
reply
1.0k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
1
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0
replies
416
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Comment: Comment: Forgot the web site with comparison of NGS platforms
7 months ago by cmdcolin ★ 4.0k
1
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1
reply
1.0k
views
Comment: Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
7 months ago by cmdcolin ★ 4.0k
0
votes
1
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562
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Comment: Comment: comparing VCF files
8 months ago by cmdcolin ★ 4.0k
1
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1
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2.3k
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Comment: Comment: How to calculate coverage of Nanopore long read data?
8 months ago by cmdcolin ★ 4.0k
2
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0
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519
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Answer: Answer: gene alignment (microsynteny)
8 months ago by cmdcolin ★ 4.0k
0
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1
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1.0k
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Answer: Answer: hg38 goldenPath cpgIsland is down?
9 months ago by cmdcolin ★ 4.0k
1
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1
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414
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Comment: Comment: How can I view the information in an alternative allele?
9 months ago by cmdcolin ★ 4.0k
2
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0
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541
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Answer: Answer: Impossible gene fusion annotations
10 months ago by cmdcolin ★ 4.0k
0
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0
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1.1k
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Comment: Comment: How to visualize multiple bacterial genomes with circos?
10 months ago by cmdcolin ★ 4.0k
0
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1
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745
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Comment: Comment: Querying nr_clustered database using BLAST REST API?
10 months ago by cmdcolin ★ 4.0k
0
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1
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745
views
Comment: Comment: Querying nr_clustered database using BLAST REST API?
10 months ago by cmdcolin ★ 4.0k
1
vote
5
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745
views
Querying nr_clustered database using BLAST REST API?
blast clustered
updated 10 months ago by 147k • written 10 months ago by ★ 4.0k
540 results • Page 1 of 11
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