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Answer: Answer: Phased haplotype using WGS data from Nebula Genomics and GATK
16 days ago by cmdcolin ★ 4.2k
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699
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Comment: Comment: finding gene sequence from WGS data
18 days ago by cmdcolin ★ 4.2k
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Comment: Comment: Setaria Pan-Genome Variation: Unraveling the Story of Domestication
29 days ago by cmdcolin ★ 4.2k
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Comment: Comment: variant calling chromosome-wise from WGS data
4 weeks ago by cmdcolin ★ 4.2k
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853
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Answer: Answer: No variant in the Pseudoautosomal regions of gomad chrY ?
4 weeks ago by cmdcolin ★ 4.2k
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Comment: Comment: The Biostar Herald for Monday, May 05, 2025
5 weeks ago by cmdcolin ★ 4.2k
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456
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Comment: Comment: Interpreting a vcf file
6 weeks ago by cmdcolin ★ 4.2k
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679
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Comment: Comment: Visualise duplications and inversions
8 weeks ago by cmdcolin ★ 4.2k
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965
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Comment: Comment: Extracting Variant Sequences from 1000 Genomes VCF File and Mapping to Canonical
8 weeks ago by cmdcolin ★ 4.2k
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1.5k
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Answer: Answer: Extract length of sample sequence from vcf
8 weeks ago by cmdcolin ★ 4.2k
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7.4k
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Comment: Comment: Convert bed12 to GFF
9 weeks ago by cmdcolin ★ 4.2k
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2.9k
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Comment: Comment: From GCA identifiers, download Genbank file format?
9 weeks ago by cmdcolin ★ 4.2k
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762
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Comment: Comment: Coverage depth using samtools
11 weeks ago by cmdcolin ★ 4.2k
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504
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Answer: Answer: CNV detection
3 months ago by cmdcolin ★ 4.2k
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978
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Comment: Comment: How to extract a multiple sequence alignment file from a CRAM file?
3 months ago by cmdcolin ★ 4.2k
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1.2k
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Comment: Comment: Find "phased segments" from trio VCF?
3 months ago by cmdcolin ★ 4.2k
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1
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1.2k
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Comment: Comment: Find "phased segments" from trio VCF?
3 months ago by cmdcolin ★ 4.2k
1
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9
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1.2k
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Find "phased segments" from trio VCF?
phased vcf genotyping variants phasing
3 months ago by cmdcolin ★ 4.2k
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1
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1.2k
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Answer: Answer: Find "phased segments" from trio VCF?
3 months ago by cmdcolin ★ 4.2k
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1.1k
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Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
3 months ago by cmdcolin ★ 4.2k
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1.1k
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Answer: Answer: Manual conversion of VCF genotypes to nucleotide sequence
3 months ago by cmdcolin ★ 4.2k
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3.3k
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Comment: Comment: sliding windows over genome
3 months ago by cmdcolin ★ 4.2k
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1.1k
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Comment: Comment: Manual conversion of VCF genotypes to nucleotide sequence
3 months ago by cmdcolin ★ 4.2k
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3.3k
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Comment: Comment: Bedmethyl file format
3 months ago by cmdcolin ★ 4.2k
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3.3k
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Comment: Comment: Bedmethyl file format
3 months ago by cmdcolin ★ 4.2k
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588
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Answer: Answer: Genomes with existing T2T assemblies?
3 months ago by cmdcolin ★ 4.2k
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484
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Comment: Comment: How to convert CIGAR string to VCF?
3 months ago by cmdcolin ★ 4.2k
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503
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Comment: Comment: GRCh38 reference paths in human pangenome
4 months ago by cmdcolin ★ 4.2k
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1.8k
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Answer: Answer: How to completely align chromosomes/scaffolds from de novo genome assemblies usi
4 months ago by cmdcolin ★ 4.2k
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1.2k
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Comment: Comment: Find "phased segments" from trio VCF?
4 months ago by cmdcolin ★ 4.2k
0
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1
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1.2k
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Comment: Comment: Find "phased segments" from trio VCF?
4 months ago by cmdcolin ★ 4.2k
0
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0
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1.2k
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Comment: Comment: Find "phased segments" from trio VCF?
4 months ago by cmdcolin ★ 4.2k
0
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1
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1.2k
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Comment: Comment: Find "phased segments" from trio VCF?
4 months ago by cmdcolin ★ 4.2k
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2.7k
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Comment: Comment: Locating IBD candidates with just VCF files
4 months ago by cmdcolin ★ 4.2k
2
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1
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796
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Comment: Comment: Overlapping regions in bedGraph
4 months ago by cmdcolin ★ 4.2k
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1.7k
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Answer: Answer: How to estimate and visualize haplotype blocks on a phased VCF/BCF
4 months ago by cmdcolin ★ 4.2k
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0
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790
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Comment: Comment: How can you interpret a phased VCF with no "phase set" field (PS)
4 months ago by cmdcolin ★ 4.2k
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1
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820
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Answer: Answer: Check the normalizations available in a hic file?
4 months ago by cmdcolin ★ 4.2k
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1
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790
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Comment: Comment: How can you interpret a phased VCF with no "phase set" field (PS)
4 months ago by cmdcolin ★ 4.2k
0
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1
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790
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Comment: Comment: How can you interpret a phased VCF with no "phase set" field (PS)
4 months ago by cmdcolin ★ 4.2k
0
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3
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790
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How can you interpret a phased VCF with no "phase set" field (PS)
variants vcf phasing genotyping
4 months ago by cmdcolin ★ 4.2k
1
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0
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998
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Answer: Answer: PanSN naming issue in pggb fastas
5 months ago by cmdcolin ★ 4.2k
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0
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692
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Comment: Comment: Optimal Method for Chain File Generation: BLAT vs Minimap2 and MAF2Chain vs axtC
6 months ago by cmdcolin ★ 4.2k
2
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0
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597
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Answer: Answer: Problem while replicating methylation predicting paper, looking for explanation
6 months ago by cmdcolin ★ 4.2k
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1
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977
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Comment: Comment: English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded
6 months ago by cmdcolin ★ 4.2k
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1
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1.7k
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Comment: Comment: Recapitulating a GenomeBrowser-style plot
6 months ago by cmdcolin ★ 4.2k
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6.5k
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Comment: Comment: Conversion Of Alignment Files
7 months ago by cmdcolin ★ 4.2k
2
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543
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Answer: Answer: Visualize and annotate protein domains within a genomic context, given complemen
7 months ago by cmdcolin ★ 4.2k
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1
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993
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Comment: Comment: identify transposable elements in iso-seq data
7 months ago by cmdcolin ★ 4.2k
4
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1
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1.2k
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Comment: Comment: The Biostar Herald for Monday, November 04, 2024
7 months ago by cmdcolin ★ 4.2k
585 results • Page 1 of 12
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