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4.6k
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Comment: Comment: bedGraph to bigwig
22 months ago by cmdcolin ★ 4.0k
4
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1
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2.7k
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Answer: Answer: Mapping a small number of contigs to a reference subsequence
22 months ago by cmdcolin ★ 4.0k
0
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1
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917
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Answer: Answer: Program to View Average Coverage with Variance of BAM/Bigwig Files?
22 months ago by cmdcolin ★ 4.0k
0
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0
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1.1k
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Comment: Comment: JBrowse on GitHub (A question about file size)
22 months ago by cmdcolin ★ 4.0k
2
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1
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1.1k
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Answer: Answer: JBrowse on GitHub (A question about file size)
22 months ago by cmdcolin ★ 4.0k
0
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0
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6.9k
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Answer: Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
22 months ago by cmdcolin ★ 4.0k
0
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0
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1.1k
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Comment: Comment: Extract alignment in fasta format from BAM/SAM file
22 months ago by cmdcolin ★ 4.0k
0
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0
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1.5k
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Comment: Comment: Get length of the alignment from bam file with shell
23 months ago by cmdcolin ★ 4.0k
4
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2
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2.3k
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Answer: Answer: How to calculate coverage of Nanopore long read data?
3 months ago by cmdcolin ★ 4.0k
0
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0
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1.4k
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Comment: Comment: batch sequence retrieval using exon coordinates
23 months ago by cmdcolin ★ 4.0k
0
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0
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1.1k
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Comment: Comment: remove CIGAR strings starting with insertion
updated 23 months ago by 44k • written 23 months ago by ★ 4.0k
3
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1
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1.1k
views
Answer: Answer: remove CIGAR strings starting with insertion
23 months ago by cmdcolin ★ 4.0k
0
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1
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901
views
Comment: Comment: Gene location of both inherited gene
23 months ago by cmdcolin ★ 4.0k
3
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1
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901
views
Answer: Answer: Gene location of both inherited gene
23 months ago by cmdcolin ★ 4.0k
0
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0
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2.5k
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Comment: Comment: find the mate of a read using pysam
23 months ago by cmdcolin ★ 4.0k
0
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1
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2.5k
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Comment: Comment: find the mate of a read using pysam
23 months ago by cmdcolin ★ 4.0k
1
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1
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5.4k
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Comment: Comment: pyCirclize - Circular visualization in Python
23 months ago by cmdcolin ★ 4.0k
0
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0
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41k
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Comment: Comment: Difference Between "Mate Pair" And "Pair-End"
23 months ago by cmdcolin ★ 4.0k
0
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1
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1.9k
views
Comment: Comment: How is p-value calculated in MACS2
23 months ago by cmdcolin ★ 4.0k
1
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1
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1.9k
views
Answer: Answer: How is p-value calculated in MACS2
23 months ago by cmdcolin ★ 4.0k
2
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1
reply
21k
views
Comment: Comment: What are Supplementary Reads?
24 months ago by cmdcolin ★ 4.0k
2
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1
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21k
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Answer: Answer: What's Supplementary Reads?
24 months ago by cmdcolin ★ 4.0k
4
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1
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105k
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Answer: Answer: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
24 months ago by cmdcolin ★ 4.0k
1
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0
replies
1.4k
views
Comment: Comment: Visualization tools for phased haplotypes
24 months ago by cmdcolin ★ 4.0k
0
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1
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1.4k
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Comment: Comment: Visualization tools for phased haplotypes
24 months ago by cmdcolin ★ 4.0k
0
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0
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595
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Answer: Answer: CNV evaluate confidence
2.0 years ago by cmdcolin ★ 4.0k
3
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0
replies
784
views
Comment: Comment: The Biostar Herald for Monday, November 14, 2022
2.0 years ago by cmdcolin ★ 4.0k
0
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0
replies
2.0k
views
Comment: Comment: How to open/work with wig or tdf files
2.1 years ago by cmdcolin ★ 4.0k
1
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0
replies
1.0k
views
Comment: Comment: Databases with Genes <-> Diseases relations
2.1 years ago by cmdcolin ★ 4.0k
1
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1
reply
1.0k
views
Answer: Answer: Databases with Genes <-> Diseases relations
2.1 years ago by cmdcolin ★ 4.0k
1
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0
replies
3.3k
views
Answer: Answer: Tools to plot gene arrow diagram
2.2 years ago by cmdcolin ★ 4.0k
0
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1
reply
677
views
Answer: Answer: Tool to detect small inversion in plastome
2.2 years ago by cmdcolin ★ 4.0k
0
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0
replies
2.0k
views
Answer: Answer: Tool for extracting part of aligned sequence by CIGAR string
2.2 years ago by cmdcolin ★ 4.0k
0
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1
reply
1.9k
views
Comment: Comment: proper way to alter bgzf-compressed fastq files using htslib, multithreaded
2.2 years ago by cmdcolin ★ 4.0k
0
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1
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1.9k
views
Comment: Comment: proper way to alter bgzf-compressed fastq files using htslib, multithreaded
2.2 years ago by cmdcolin ★ 4.0k
0
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1
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2.2k
views
Comment: Comment: From fastq files to fasta
2.2 years ago by cmdcolin ★ 4.0k
0
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0
replies
3.1k
views
Comment: Comment: Tools to obtain sequence from bam file
2.2 years ago by cmdcolin ★ 4.0k
0
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0
replies
2.9k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.2 years ago by cmdcolin ★ 4.0k
0
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2
replies
2.9k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
2.2 years ago by cmdcolin ★ 4.0k
0
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1
reply
1.3k
views
Comment: Comment: Which VCF file to select for generating Multiple sequence alignment of a gene?
2.2 years ago by cmdcolin ★ 4.0k
0
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0
replies
1.3k
views
Comment: Comment: Which VCF file to select for generating Multiple sequence alignment of a gene?
2.2 years ago by cmdcolin ★ 4.0k
1
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2
replies
1.3k
views
Answer: Answer: Which VCF file to select for generating Multiple sequence alignment of a gene?
2.2 years ago by cmdcolin ★ 4.0k
0
votes
1
reply
807
views
Comment: Comment: PAN GENOME versus REFERENCE GENOME
2.2 years ago by cmdcolin ★ 4.0k
0
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1
reply
2.2k
views
Comment: Comment: paired-end reads, idxstats, and samtools and grep
2.2 years ago by cmdcolin ★ 4.0k
0
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0
replies
1.3k
views
Comment: Comment: Convert a cram file to fasta
2.2 years ago by cmdcolin ★ 4.0k
0
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1
reply
1.3k
views
Comment: Comment: Convert a cram file to fasta
2.2 years ago by cmdcolin ★ 4.0k
1
vote
1
reply
3.1k
views
Answer: Answer: Tools to obtain sequence from bam file
2.2 years ago by cmdcolin ★ 4.0k
1
vote
0
replies
955
views
Comment: Comment: Chromosome pair numbers in variant annotation.
2.2 years ago by cmdcolin ★ 4.0k
4
votes
1
reply
955
views
Answer: Answer: Chromosome pair numbers in variant annotation.
2.2 years ago by cmdcolin ★ 4.0k
2
votes
0
replies
1.9k
views
Answer: Answer: Copy Number Variation (CNV) visualizer
2.3 years ago by cmdcolin ★ 4.0k
541 results • Page 4 of 11
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