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Comment: C: Distinguishing between different formats for VCF file indexes
5.4 years ago by cmdcolin ★ 4.0k
2
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1
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1.8k
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Comment: C: How to clean this strange VCF file?
5.4 years ago by cmdcolin ★ 4.0k
0
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0
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2.0k
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Comment: C: JBrowse help with opening a Gff gene model file
5.4 years ago by cmdcolin ★ 4.0k
0
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1
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2.0k
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Comment: C: JBrowse help with opening a Gff gene model file
5.5 years ago by cmdcolin ★ 4.0k
1
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0
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16k
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Comment: C: How To Merge Gff Files
5.5 years ago by cmdcolin ★ 4.0k
0
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1
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2.0k
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Comment: C: JBrowse help with opening a Gff gene model file
5.5 years ago by cmdcolin ★ 4.0k
0
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1
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2.0k
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Comment: C: JBrowse help with opening a Gff gene model file
5.5 years ago by cmdcolin ★ 4.0k
0
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0
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1.5k
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Comment: C: convert BAM files to bed file
5.5 years ago by cmdcolin ★ 4.0k
13
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2
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25k
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Answer: A: Piping bowtie2 output directly into BAM
5.7 years ago by cmdcolin ★ 4.0k
1
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1
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1.9k
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Answer: A: What causes Linear relations on MAplots?
5.7 years ago by cmdcolin ★ 4.0k
0
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1
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9.1k
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Comment: C: Bio-DB-HTS installation and ensembl-vep
5.8 years ago by cmdcolin ★ 4.0k
1
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0
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2.9k
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Comment: C: Getting these files from different parts of genome
5.8 years ago by cmdcolin ★ 4.0k
1
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1
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2.0k
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Comment: C: IGB won't open .gff file.
5.8 years ago by cmdcolin ★ 4.0k
4
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1
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1.5k
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Answer: A: Plotting MBD-seq results
5.8 years ago by cmdcolin ★ 4.0k
0
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0
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1.1k
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Comment: C: Parse sim4 output alignment format
5.8 years ago by cmdcolin ★ 4.0k
1
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0
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17k
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Answer: A: Extract reads within given region, and their mates
5.8 years ago by cmdcolin ★ 4.0k
1
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0
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1.5k
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Comment: C: Efficent Estimation of Sequencing Coverage
5.8 years ago by cmdcolin ★ 4.0k
0
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0
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5.1k
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Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.8 years ago by cmdcolin ★ 4.0k
0
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1
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5.1k
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Comment: C: Extract read sequence from BAM files depending on the alignment coordinates
5.8 years ago by cmdcolin ★ 4.0k
3
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1
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5.1k
views
Answer: A: Extract read sequence from BAM files depending on the alignment coordinates
5.8 years ago by cmdcolin ★ 4.0k
0
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0
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6.2k
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Comment: C: Use samtools to access bam file in aws s3 storage
5.8 years ago by cmdcolin ★ 4.0k
2
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0
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8.7k
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Comment: C: How To Convert A Fasta Sequence Format Into Binary Format (0-1)?
5.9 years ago by cmdcolin ★ 4.0k
2
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0
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3.4k
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Answer: A: Finding Gene Name Synonyms
5.9 years ago by cmdcolin ★ 4.0k
0
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1
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5.1k
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Answer: A: how to extract per base information (in coverage track of IGV) from .bam file
5.9 years ago by cmdcolin ★ 4.0k
0
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0
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5.9k
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Answer: A: samtools covert to bam, sort and index all gz.sam
5.9 years ago by cmdcolin ★ 4.0k
1
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0
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1.9k
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Answer: A: strand identification from sam file
5.9 years ago by cmdcolin ★ 4.0k
0
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0
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1.6k
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Comment: C: Top GitHub repos for biomedicine
5.9 years ago by cmdcolin ★ 4.0k
0
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0
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1.9k
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Comment: C: How To Convert Wgsim Output Into A Vcf File?
5.9 years ago by cmdcolin ★ 4.0k
2
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0
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2.0k
views
Comment: C: JBrowse Error : HTTP 200 when fetching file
5.9 years ago by cmdcolin ★ 4.0k
1
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0
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1.3k
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Answer: A: Is there a standard file format for anchored contigs?
5.9 years ago by cmdcolin ★ 4.0k
1
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0
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4.5k
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Answer: A: Full genome phyloP scores from UCSC Browser
5.9 years ago by cmdcolin ★ 4.0k
0
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1
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4.2k
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Comment: C: IGV ignoring indexed and sorted .bai file and trying to create a .fai file to vi
5.9 years ago by cmdcolin ★ 4.0k
4
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6
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6.0k
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Failed to populate reference for id 1?
samtools
6.0 years ago by cmdcolin ★ 4.0k
0
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0
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6.0k
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Answer: A: Failed to populate reference for id 1?
6.0 years ago by cmdcolin ★ 4.0k
0
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1
reply
6.0k
views
Comment: C: Failed to populate reference for id 1?
6.0 years ago by cmdcolin ★ 4.0k
0
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0
replies
6.0k
views
Comment: C: Failed to populate reference for id 1?
6.0 years ago by cmdcolin ★ 4.0k
0
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0
replies
1.4k
views
Comment: C: 3' UTR FASTA back to genes
6.1 years ago by cmdcolin ★ 4.0k
0
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0
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5.0k
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Comment: C: Filter VCF by sample?
6.1 years ago by cmdcolin ★ 4.0k
1
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0
replies
3.4k
views
Comment: C: So frustrated compiling necessary packages in a linux system
6.1 years ago by cmdcolin ★ 4.0k
0
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0
replies
7.1k
views
Answer: A: Extracting Read Pairs From Region So That All Pairs Remain Intact
6.1 years ago by cmdcolin ★ 4.0k
0
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0
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7.1k
views
Comment: C: Extracting Read Pairs From Region So That All Pairs Remain Intact
6.1 years ago by cmdcolin ★ 4.0k
1
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2
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1.4k
views
Comment: C: 4/6 genotype in VCF
6.2 years ago by cmdcolin ★ 4.0k
0
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0
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43k
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Comment: C: What is the difference between GTF AND GFF format
updated 6.2 years ago by 44k • written 7.4 years ago by ★ 4.0k
3
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0
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25k
views
Answer: A: How To Convert Blast Results To Gff
updated 6.2 years ago by 44k • written 8.9 years ago by ★ 4.0k
0
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0
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48k
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Comment: C: Where Can I Download Some Bam Files?
6.3 years ago by cmdcolin ★ 4.0k
2
votes
1
reply
3.4k
views
Answer: A: How do I filter my VCF file to only include certain coordinates from a BED file?
6.3 years ago by cmdcolin ★ 4.0k
1
vote
1
reply
1.6k
views
Comment: C: How to customize the looks of dynamically generated tracks in jbrowse?
6.3 years ago by cmdcolin ★ 4.0k
4
votes
1
reply
2.4k
views
Answer: A: parsing gff3 file
6.3 years ago by cmdcolin ★ 4.0k
0
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1
reply
1.6k
views
Answer: A: How to customize the looks of dynamically generated tracks in jbrowse?
updated 6.3 years ago by 7.6k • written 6.3 years ago by ★ 4.0k
0
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0
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7.0k
views
Comment: C: How to order a gff3 file by coordinates
6.3 years ago by cmdcolin ★ 4.0k
541 results • Page 8 of 11
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