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5
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9
replies
1.5k
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Wildcards in Snakemake
Python workflow Snakemake wrapper
updated 16 months ago by 23k • written 16 months ago by ▴ 210
1
vote
1
reply
659
views
Manage the wrappers in Snakemake
snakemake python
updated 16 months ago by 44k • written 16 months ago by ▴ 210
0
votes
0
replies
1.3k
views
Comment: Comment: Snakemake alignment script
16 months ago by Begonia_pavonina ▴ 210
4
votes
5
replies
1.3k
views
Snakemake alignment script
snakemake alignment
16 months ago by Begonia_pavonina ▴ 210
0
votes
1
reply
1.3k
views
Comment: Comment: Snakemake alignment script
16 months ago by Begonia_pavonina ▴ 210
0
votes
0
replies
1.3k
views
Comment: Comment: Snakemake alignment script
16 months ago by Begonia_pavonina ▴ 210
0
votes
1
reply
1.9k
views
Comment: Comment: The GATK "The given bam input has no sample names." error
18 months ago by Begonia_pavonina ▴ 210
0
votes
2
replies
1.9k
views
Comment: Comment: The GATK "The given bam input has no sample names." error
18 months ago by Begonia_pavonina ▴ 210
3
votes
6
replies
1.9k
views
The GATK "The given bam input has no sample names." error
GATK BWA
updated 18 months ago by 149k • written 18 months ago by ▴ 210
0
votes
0
replies
2.1k
views
Comment: Comment: From VCF to BEAGLE format with multiple chromosomes
21 months ago by Begonia_pavonina ▴ 210
0
votes
1
reply
2.1k
views
Comment: Comment: From VCF to BEAGLE format with multiple chromosomes
21 months ago by Begonia_pavonina ▴ 210
2
votes
1
reply
1.0k
views
Calculate the kinship matrix from NGS data
PCangsd kinship BEAGLE ANGSD
updated 22 months ago by 11k • written 22 months ago by ▴ 210
0
votes
0
replies
1.0k
views
How to get BEAGLE files from VCF with angsd?
angsd vcf populationgenetics beagle pcangsd
22 months ago by Begonia_pavonina ▴ 210
0
votes
1
reply
1.3k
views
Comment: Comment: Using vcfR to group variants per annotations
23 months ago by Begonia_pavonina ▴ 210
3
votes
3
replies
1.3k
views
Using vcfR to group variants per annotations
vcf vcfR R
updated 23 months ago by ★ 2.8k • written 23 months ago by ▴ 210
1
vote
1
reply
1.9k
views
Comment: Comment: Filter out overlapping deletions from a VCF file.
24 months ago by Begonia_pavonina ▴ 210
0
votes
1
reply
1.9k
views
Comment: Comment: Filter out overlapping deletions from a VCF file.
24 months ago by Begonia_pavonina ▴ 210
4
votes
5
replies
1.9k
views
Filter out overlapping deletions from a VCF file.
vcf bcftools gvcf
updated 6 months ago by ▴ 210 • written 24 months ago by ▴ 210
1
vote
4
replies
2.1k
views
From VCF to BEAGLE format with multiple chromosomes
vcf vcftools beagle gvcf
21 months ago by Begonia_pavonina ▴ 210
0
votes
0
replies
514
views
Plot Phylogenetic tree with traits in Biopython
Biopython Phylo Python Phylogeny
2.3 years ago by Begonia_pavonina ▴ 210
1
vote
1
reply
1.5k
views
Labels colors in Bio.Phylo
Bio.Phylo Python BioPython
updated 2.3 years ago by 3.3k • written 2.3 years ago by ▴ 210
1
vote
0
replies
1.9k
views
Comment: Comment: Bootstraps values in iqtree
2.3 years ago by Begonia_pavonina ▴ 210
3
votes
2
replies
1.9k
views
Bootstraps values in iqtree
iqtree
2.3 years ago by Begonia_pavonina ▴ 210
5
votes
4
replies
2.5k
views
IQ-TREE stuck in selecting a substitution model with ModelFinder
substitution ModelFInder model IQ-TREE
updated 20 months ago by ▴ 920 • written 2.6 years ago by ▴ 210
0
votes
1
reply
2.5k
views
Comment: Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
2.6 years ago by Begonia_pavonina ▴ 210
0
votes
3
replies
2.0k
views
Answer: Answer: GenotypeGVCF too many genotypes from pooled samples
2.6 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
9.2k
views
Comment: Comment: Question about ROH analysis by Plink 1.9
2.7 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
5.1k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
3.0 years ago by Begonia_pavonina ▴ 210
0
votes
1
reply
5.1k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
3.0 years ago by Begonia_pavonina ▴ 210
0
votes
1
reply
5.1k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
3.0 years ago by Begonia_pavonina ▴ 210
0
votes
2
replies
5.1k
views
Comment: Comment: Snakemake 'Unexpected keyword ref in rule definition'
3.0 years ago by Begonia_pavonina ▴ 210
7
votes
12
replies
5.1k
views
Snakemake 'Unexpected keyword ref in rule definition'
snakemake python
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 210
0
votes
1
reply
5.1k
views
Answer: Answer: Snakemake 'Unexpected keyword ref in rule definition'
3.0 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
1.0k
views
Comment: Comment: Multiple samples in PLINK
3.1 years ago by Begonia_pavonina ▴ 210
1
vote
2
replies
1.0k
views
Multiple samples in PLINK
gvcf plink roh variants
3.1 years ago by Begonia_pavonina ▴ 210
2
votes
0
replies
4.0k
views
Comment: Comment: gVCF files into Plink!
3.1 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
1.8k
views
Comment: Comment: Confused about PED and MAP file
3.1 years ago by Begonia_pavonina ▴ 210
1
vote
2
replies
1.8k
views
Confused about PED and MAP file
PED PLINK MAP detectRUNS
3.1 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
9.2k
views
Comment: Comment: Question about ROH analysis by Plink 1.9
3.2 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
522
views
Label groups with samples names in snpgdsDrawTree (SNPRelate package)
SNPRelate
3.2 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
2.4k
views
Comment: Comment: No header in VCF file
3.3 years ago by Begonia_pavonina ▴ 210
1
vote
2
replies
2.4k
views
No header in VCF file
VCF bcftools header
3.3 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
908
views
Comment: Comment: Plotting chromosomes and target capture baits
3.4 years ago by Begonia_pavonina ▴ 210
1
vote
2
replies
908
views
Plotting chromosomes and target capture baits
plotting target_capture Hyb-Seq R
3.4 years ago by Begonia_pavonina ▴ 210
0
votes
1
reply
2.6k
views
Missing read group in BAM files
BWA ValidateSamFile BAM GATK HybPiper
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 210
2
votes
1
reply
1.2k
views
Find and replace the RNAME field in BAM/SAM file
samtools bam loop sed sam
updated 3.7 years ago by 149k • written 3.7 years ago by ▴ 210
0
votes
0
replies
519
views
KeyError in the pipeline SECAPR
SECAPR Hyb-Seq locus_selection Python Key_error
3.8 years ago by Begonia_pavonina ▴ 210
0
votes
0
replies
626
views
SECAPR issue
SECAPR reads trimmomatic pipeline alignement
3.8 years ago by Begonia_pavonina ▴ 210
3
votes
8
replies
2.8k
views
blast2gff IndexError: list index out of range
blast2gff GFF BLAST Python blastn
updated 3.5 years ago by • 0 • written 4.5 years ago by ▴ 210
0
votes
0
replies
3.9k
views
Comment: C: merging overlaping ranges with GenomicRanges
4.3 years ago by Begonia_pavonina ▴ 210
138 results • Page 2 of 3
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