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Comment: Comment: If R package is already install - load it; if not installed, install it
2.6 years ago by melissachua90 ▴ 70
0
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1
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2.8k
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Comment: Comment: If R package is already install - load it; if not installed, install it
2.6 years ago by melissachua90 ▴ 70
0
votes
1
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2.8k
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Comment: Comment: If R package is already install - load it; if not installed, install it
2.6 years ago by melissachua90 ▴ 70
1
vote
7
replies
2.8k
views
If R package is already install - load it; if not installed, install it
R
updated 2.6 years ago by 44k • written 2.6 years ago by ▴ 70
0
votes
0
replies
1.7k
views
Comment: Comment: Filter out low coverage contigs
2.6 years ago by melissachua90 ▴ 70
0
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1
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1.7k
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Comment: Comment: Filter out low coverage contigs
2.6 years ago by melissachua90 ▴ 70
0
votes
1
reply
1.7k
views
Comment: Comment: Filter out low coverage contigs
2.6 years ago by melissachua90 ▴ 70
0
votes
7
replies
1.7k
views
Filter out low coverage contigs
bash contigs
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 70
2
votes
1
reply
2.1k
views
Samtools coverage vs samtools depth for % coverage
samtools
updated 2.6 years ago by 102k • written 2.6 years ago by ▴ 70
0
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1
reply
3.2k
views
Comment: Comment: Estimate K-mer size for de novo assembly
2.6 years ago by melissachua90 ▴ 70
0
votes
4
replies
3.2k
views
Estimate K-mer size for de novo assembly
de novo assembly soapdenovo estimation kmergenie K-mer
updated 2.6 years ago by ★ 28k • written 2.6 years ago by ▴ 70
0
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0
replies
1.5k
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Comment: Comment: [E::bwa_idx_load_from_disk] fail to locate the index files
2.7 years ago by melissachua90 ▴ 70
3
votes
5
replies
1.5k
views
[E::bwa_idx_load_from_disk] fail to locate the index files
alignment BWA
2.7 years ago by melissachua90 ▴ 70
8
votes
3
replies
997
views
MultiQC output shows that data processing steps are ineffective
FastQC trimming
updated 19 months ago by 44k • written 2.7 years ago by ▴ 70
1
vote
1
reply
2.7k
views
How do I combine MAF files with clinical data to perform clinical enrichment analysis?
maftools maf mutation
updated 18 months ago by 44k • written 2.8 years ago by ▴ 70
0
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1
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1.1k
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Comment: Comment: Reference-based alignment using MUSKET
2.7 years ago by melissachua90 ▴ 70
5
votes
2
replies
1.2k
views
How to determine the K-mer size?
k-mer
updated 2.7 years ago by ★ 28k • written 2.7 years ago by ▴ 70
0
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1
reply
1.1k
views
Comment: Comment: Reference-based alignment using MUSKET
2.7 years ago by melissachua90 ▴ 70
0
votes
5
replies
1.1k
views
Reference-based alignment using MUSKET
parallel HPC reference-based alignment MUSKET
updated 2.7 years ago by ★ 28k • written 2.7 years ago by ▴ 70
1
vote
2
replies
1.1k
views
BBDuk returned java.lang.AssertionError
fasta bbduk fastq ngs
updated 2.7 years ago by 148k • written 2.7 years ago by ▴ 70
0
votes
1
reply
611
views
Paired-end dataset from SRA database
paired-end sra
updated 2.7 years ago by 86k • written 2.7 years ago by ▴ 70
0
votes
1
reply
802
views
Comment: Comment: Efficient way to download SRA dataset
2.7 years ago by melissachua90 ▴ 70
0
votes
4
replies
802
views
Efficient way to download SRA dataset
sra
updated 2.7 years ago by 5.0k • written 2.7 years ago by ▴ 70
0
votes
0
replies
888
views
Comment: Comment: Fastq-dump warning: too many reads at spot id
2.7 years ago by melissachua90 ▴ 70
1
vote
3
replies
888
views
Fastq-dump warning: too many reads at spot id
fastq-dump
updated 2.7 years ago by ★ 2.1k • written 2.7 years ago by ▴ 70
0
votes
2
replies
798
views
Pathway databases for machine learning
pathway machine database CNN learning
updated 2.7 years ago by 44k • written 2.7 years ago by ▴ 70
0
votes
1
reply
897
views
Comment: Comment: Missing SAM header when piping the samtools mpileup output to a VarScan call
2.7 years ago by melissachua90 ▴ 70
0
votes
4
replies
897
views
Missing SAM header when piping the samtools mpileup output to a VarScan call
samtools varscan
updated 2.7 years ago by 44k • written 2.7 years ago by ▴ 70
0
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1
reply
1.2k
views
Comment: Comment: Varscan output variant file - is it the "true" file?
2.7 years ago by melissachua90 ▴ 70
0
votes
1
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1.2k
views
Comment: Comment: Varscan output variant file - is it the "true" file?
2.7 years ago by melissachua90 ▴ 70
0
votes
4
replies
1.2k
views
Varscan output variant file - is it the "true" file?
varscan
updated 2.7 years ago by 86k • written 2.7 years ago by ▴ 70
1
vote
1
reply
1.3k
views
IGV "Cannot find feature or locus" error
IGV
updated 2.7 years ago by 3.3k • written 2.7 years ago by ▴ 70
0
votes
1
reply
1.2k
views
Comment: Comment: How do I load bam file and idx.fa file to the IGV browser?
2.7 years ago by melissachua90 ▴ 70
0
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1
reply
1.2k
views
Comment: Comment: How do I load bam file and idx.fa file to the IGV browser?
2.7 years ago by melissachua90 ▴ 70
0
votes
5
replies
1.2k
views
How do I load bam file and idx.fa file to the IGV browser?
igv
updated 2.7 years ago by 148k • written 2.7 years ago by ▴ 70
0
votes
1
reply
1.4k
views
Comment: Comment: Use RSEM and Bowtie2 to align paired-end sequences
2.7 years ago by melissachua90 ▴ 70
0
votes
1
reply
1.4k
views
Comment: Comment: Use RSEM and Bowtie2 to align paired-end sequences
2.7 years ago by melissachua90 ▴ 70
1
vote
5
replies
1.4k
views
Use RSEM and Bowtie2 to align paired-end sequences
bowtie2 rsem
updated 2.7 years ago by 86k • written 2.7 years ago by ▴ 70
1
vote
2
replies
1.1k
views
Bowtie produced empty .sam file
bowtie
updated 2.7 years ago by 11k • written 2.7 years ago by ▴ 70
0
votes
1
reply
2.8k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.7 years ago by melissachua90 ▴ 70
0
votes
1
reply
864
views
Comment: Comment: Bowtie: Find the tradeoffs between seed length argument
2.7 years ago by melissachua90 ▴ 70
0
votes
3
replies
864
views
Bowtie: Find the tradeoffs between seed length argument
bowtie
updated 2.7 years ago by 86k • written 2.7 years ago by ▴ 70
0
votes
1
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2.8k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.7 years ago by melissachua90 ▴ 70
0
votes
1
reply
2.8k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.7 years ago by melissachua90 ▴ 70
0
votes
1
reply
2.8k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.7 years ago by melissachua90 ▴ 70
0
votes
1
reply
2.8k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.7 years ago by melissachua90 ▴ 70
0
votes
1
reply
2.8k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.7 years ago by melissachua90 ▴ 70
0
votes
2
replies
2.8k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.7 years ago by melissachua90 ▴ 70
0
votes
15
replies
2.8k
views
Bowtie: How do I map files to reference genome?
bowtie
updated 2.7 years ago by 8.9k • written 2.7 years ago by ▴ 70
0
votes
5
replies
1.2k
views
How do I install MAQ software on Ubuntu?
MAQ
updated 2.7 years ago by ★ 2.9k • written 2.7 years ago by ▴ 70
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