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Comment: Comment: Bowtie2 Alignment with low percentage of properly paired reads (ATAC-seq)
2.1 years ago by Marco Pannone ▴ 810
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1.4k
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Comment: Comment: Exon counts do not match gene and transcript counts
2.1 years ago by Marco Pannone ▴ 810
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1.6k
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Comment: Comment: How to perform paired t-test in R for obtaining p-value of each gene?
2.1 years ago by Marco Pannone ▴ 810
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2
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1.4k
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Comment: Comment: ChIPQC error <<Unable to process. Each bam file must be associated with at most
2.1 years ago by Marco Pannone ▴ 810
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1
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1.4k
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Comment: Comment: ChIPQC error <<Unable to process. Each bam file must be associated with at most
2.1 years ago by Marco Pannone ▴ 810
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0
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935
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Comment: Comment: Bowtie 2 error- bowtie2-align died with signal 6 (ABRT): Help please!
2.1 years ago by Marco Pannone ▴ 810
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0
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821
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Comment: Comment: quality control chip-seq
2.1 years ago by Marco Pannone ▴ 810
1
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1
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848
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Comment: Comment: To order list of genes
2.1 years ago by Marco Pannone ▴ 810
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2.3k
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Comment: Comment: Pathway Score measurement in R
2.1 years ago by Marco Pannone ▴ 810
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0
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695
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Comment: Comment: DESeq2. Multi-factor Interactions designs
2.1 years ago by Marco Pannone ▴ 810
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1.8k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
2.1 years ago by Marco Pannone ▴ 810
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2
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1.8k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
2.1 years ago by Marco Pannone ▴ 810
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1
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1.8k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
2.1 years ago by Marco Pannone ▴ 810
1
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1
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1.8k
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Answer: Answer: Convert Gene Ensemble IDs to Gene Symbols on R
2.1 years ago by Marco Pannone ▴ 810
1
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2
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957
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Answer: Answer: How to add line breaks before each ">" header line in fasta file
2.1 years ago by Marco Pannone ▴ 810
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0
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1.0k
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Comment: Comment: Change of -t argument in featureCounts affecting annotation
2.1 years ago by Marco Pannone ▴ 810
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1
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1.0k
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Comment: Comment: Change of -t argument in featureCounts affecting annotation
2.1 years ago by Marco Pannone ▴ 810
3
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4
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1.0k
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Change of -t argument in featureCounts affecting annotation
rnaseq subread annotation featureCounts
2.1 years ago by Marco Pannone ▴ 810
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0
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948
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Comment: Comment: Deeptools comparing heatmap zMin and zMax across different plotHeatmaps
2.2 years ago by Marco Pannone ▴ 810
0
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1
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948
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Comment: Comment: Deeptools comparing heatmap zMin and zMax across different plotHeatmaps
2.2 years ago by Marco Pannone ▴ 810
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0
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5.7k
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Comment: Comment: Unable to install bioconda and bowtie
2.2 years ago by Marco Pannone ▴ 810
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0
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2.3k
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Comment: Comment: How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
2.2 years ago by Marco Pannone ▴ 810
0
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1
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5.7k
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Comment: Comment: Unable to install bioconda and bowtie
2.2 years ago by Marco Pannone ▴ 810
0
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1
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5.7k
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Comment: Comment: Unable to install bioconda and bowtie
2.2 years ago by Marco Pannone ▴ 810
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0
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799
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Comment: Comment: calling peaks in ChIP-seq datasets from bedgraph files
2.2 years ago by Marco Pannone ▴ 810
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0
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874
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Comment: Comment: macs callpeak q value cutoff 1 and 0.05 with different peak result
2.2 years ago by Marco Pannone ▴ 810
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1
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925
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Comment: Comment: trimmomatic
2.2 years ago by Marco Pannone ▴ 810
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1
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1.0k
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Answer: Answer: How can I filter genes >10 reads in at least 2 replicates
2.3 years ago by Marco Pannone ▴ 810
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0
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773
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Comment: Comment: Genome indexing
2.3 years ago by Marco Pannone ▴ 810
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1
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773
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Comment: Comment: Genome indexing
2.3 years ago by Marco Pannone ▴ 810
5
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1
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902
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Answer: Answer: How to extract the read counts after normalization with DESeq in R?
2.3 years ago by Marco Pannone ▴ 810
2
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0
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539
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Answer: Answer: Rare chromosomes list in VCF file
2.3 years ago by Marco Pannone ▴ 810
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0
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1.3k
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Comment: Comment: PlotHeatmap in deeptools horizontally
2.3 years ago by Marco Pannone ▴ 810
0
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1
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1.3k
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Comment: Comment: PlotHeatmap in deeptools horizontally
2.3 years ago by Marco Pannone ▴ 810
1
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1
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1.3k
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Comment: Comment: Increased GC content after trimming RNAseq data
2.3 years ago by Marco Pannone ▴ 810
2
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1
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1.3k
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Comment: Comment: PlotHeatmap in deeptools horizontally
2.3 years ago by Marco Pannone ▴ 810
1
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1
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2.3k
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Answer: Answer: gene set enrichment analysis
2.4 years ago by Marco Pannone ▴ 810
0
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0
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4.4k
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Comment: Comment: Cut&Run vs ChIP-seq pipeline
2.4 years ago by Marco Pannone ▴ 810
0
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1
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4.4k
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Comment: Comment: Cut&Run vs ChIP-seq pipeline
2.4 years ago by Marco Pannone ▴ 810
4
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5
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4.4k
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Cut&Run vs ChIP-seq pipeline
chip-seq cut-run
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 810
2
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1
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953
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Comment: Comment: Error in DiffBind
2.4 years ago by Marco Pannone ▴ 810
1
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0
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1.7k
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Comment: Comment: How to do GO enrichment analysis for Klebsiella pneumonia?
2.4 years ago by Marco Pannone ▴ 810
2
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1
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891
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Answer: Answer: DESeq2: Multiple disease condition vs Normal
2.4 years ago by Marco Pannone ▴ 810
0
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0
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391
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Explore transcription data of pseudogenes
pseudogenes transcriptome databases RNA-seq
2.4 years ago by Marco Pannone ▴ 810
0
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1
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1.3k
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Comment: Comment: Possible rRNA contamination in one sample
2.5 years ago by Marco Pannone ▴ 810
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1
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1.3k
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Comment: Comment: Possible rRNA contamination in one sample
2.5 years ago by Marco Pannone ▴ 810
0
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1
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1.3k
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Comment: Comment: Possible rRNA contamination in one sample
2.5 years ago by Marco Pannone ▴ 810
1
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1
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1.3k
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Comment: Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
2.5 years ago by Marco Pannone ▴ 810
0
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1
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1.3k
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Comment: Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
2.5 years ago by Marco Pannone ▴ 810
0
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0
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875
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Comment: Comment: BED file from GSEA gene set
2.5 years ago by Marco Pannone ▴ 810
194 results • Page 2 of 4
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