Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
1
reply
2.5k
views
Comment: Comment: Bulk RNA seq: all p adjusted are the same
2.7 years ago by Marco Pannone ▴ 810
0
votes
1
reply
4.0k
views
Comment: Comment: How to learn bioinformatics?
2.7 years ago by Marco Pannone ▴ 810
0
votes
1
reply
1.4k
views
Comment: Comment: GSEA not returning significant gene sets
2.7 years ago by Marco Pannone ▴ 810
5
votes
1
reply
4.0k
views
Answer: Answer: How to learn bioinformatics?
2.7 years ago by Marco Pannone ▴ 810
0
votes
0
replies
742
views
Comment: Comment: How to search and identify the function of DEGs
2.7 years ago by Marco Pannone ▴ 810
0
votes
0
replies
742
views
Comment: Comment: How to search and identify the function of DEGs
2.7 years ago by Marco Pannone ▴ 810
1
vote
1
reply
1.0k
views
Comment: Comment: Merge featurecounts lists
2.8 years ago by Marco Pannone ▴ 810
0
votes
0
replies
875
views
Comment: Comment: Comparing overrepresented sequences from fastqc.txt file
2.8 years ago by Marco Pannone ▴ 810
0
votes
0
replies
869
views
Comment: Comment: Aggregation of bulk RNA-seq
2.8 years ago by Marco Pannone ▴ 810
1
vote
0
replies
3.0k
views
Answer: Answer: determine sex ratio from the bam file
2.8 years ago by Marco Pannone ▴ 810
0
votes
0
replies
1.0k
views
Comment: Comment: Merging a low quality run of a sample with a high quality run (RNAseq)
2.9 years ago by Marco Pannone ▴ 810
0
votes
1
reply
1.0k
views
Comment: Comment: Merging a low quality run of a sample with a high quality run (RNAseq)
2.9 years ago by Marco Pannone ▴ 810
1
vote
1
reply
627
views
Answer: Answer: Network visualization
2.9 years ago by Marco Pannone ▴ 810
3
votes
0
replies
509
views
Comment: Comment: concatenated datasets for HISAT2 alignment
2.9 years ago by Marco Pannone ▴ 810
1
vote
1
reply
5.7k
views
Comment: Comment: Error with per tile sequence quality (by FastQC)
2.9 years ago by Marco Pannone ▴ 810
0
votes
1
reply
5.7k
views
Comment: Comment: Error with per tile sequence quality (by FastQC)
2.9 years ago by Marco Pannone ▴ 810
0
votes
1
reply
4.2k
views
Comment: Comment: make a BED file with exons only
2.9 years ago by Marco Pannone ▴ 810
0
votes
1
reply
5.7k
views
Comment: Comment: Error with per tile sequence quality (by FastQC)
2.9 years ago by Marco Pannone ▴ 810
0
votes
0
replies
859
views
Comment: Comment: What does it mean by local structure?
2.9 years ago by Marco Pannone ▴ 810
0
votes
0
replies
3.8k
views
Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
2.9 years ago by Marco Pannone ▴ 810
1
vote
1
reply
3.8k
views
Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
2.9 years ago by Marco Pannone ▴ 810
0
votes
0
replies
1.1k
views
Comment: Comment: Bowtie produced empty .sam file
2.9 years ago by Marco Pannone ▴ 810
2
votes
1
reply
3.8k
views
Comment: Comment: Can I convert HTSeq count into RPKM or TPM value or standard unit of RNA-Seq
2.9 years ago by Marco Pannone ▴ 810
0
votes
0
replies
925
views
Comment: Comment: Cytoscape network analysis
2.9 years ago by Marco Pannone ▴ 810
1
vote
2
replies
925
views
Cytoscape network analysis
protein-protein network interaction Cytoscape
2.9 years ago by Marco Pannone ▴ 810
0
votes
1
reply
1.2k
views
Comment: Comment: featureCounts stuck
2.9 years ago by Marco Pannone ▴ 810
0
votes
4
replies
1.2k
views
featureCounts stuck
featureCounts rnaseq
updated 2.9 years ago by 149k • written 2.9 years ago by ▴ 810
0
votes
1
reply
2.4k
views
Comment: Comment: Pseudocounts in RNA-seq analysis
3.0 years ago by Marco Pannone ▴ 810
1
vote
3
replies
2.4k
views
Pseudocounts in RNA-seq analysis
pseudo rnaseq counts deseq2
updated 3.0 years ago by 86k • written 3.0 years ago by ▴ 810
0
votes
1
reply
1.8k
views
Comment: Comment: featureCounts : GFF3 gene identifier and low percentage of assigned alignments
3.2 years ago by Marco Pannone ▴ 810
0
votes
0
replies
918
views
Comment: Comment: Generating multiple heatmaps with heatmap3 and lapply
3.2 years ago by Marco Pannone ▴ 810
3
votes
2
replies
918
views
Generating multiple heatmaps with heatmap3 and lapply
heatmap3 rstudio heatmaps lapply
3.2 years ago by Marco Pannone ▴ 810
2
votes
1
reply
3.1k
views
Answer: Answer: How to merge samples of the same cell type to do differential peak calling?
3.2 years ago by Marco Pannone ▴ 810
0
votes
0
replies
1.1k
views
Comment: Comment: Question regarding Enhancers
3.2 years ago by Marco Pannone ▴ 810
0
votes
0
replies
3.3k
views
Comment: Comment: merging .narrowPeak files with all of the columns they have
3.2 years ago by Marco Pannone ▴ 810
0
votes
1
reply
3.3k
views
Comment: Comment: merging .narrowPeak files with all of the columns they have
3.2 years ago by Marco Pannone ▴ 810
0
votes
1
reply
3.3k
views
Comment: Comment: merging .narrowPeak files with all of the columns they have
3.2 years ago by Marco Pannone ▴ 810
1
vote
0
replies
1.6k
views
Comment: Comment: genomecov VS bamCoverage
3.2 years ago by Marco Pannone ▴ 810
1
vote
1
reply
3.3k
views
Comment: Comment: merging .narrowPeak files with all of the columns they have
3.2 years ago by Marco Pannone ▴ 810
2
votes
0
replies
1.5k
views
Comment: Comment: Filtering Gene by mean expression
3.2 years ago by Marco Pannone ▴ 810
0
votes
0
replies
1.5k
views
Comment: Comment: Filtering Gene by mean expression
3.2 years ago by Marco Pannone ▴ 810
1
vote
1
reply
2.1k
views
Comment: Comment: HTSeq-count : is it same to use .bam file or .sam file?
3.2 years ago by Marco Pannone ▴ 810
0
votes
2
replies
2.2k
views
Comment: Comment: featureCounts fragment count
3.2 years ago by Marco Pannone ▴ 810
0
votes
1
reply
3.7k
views
Answer: Answer: BAM file reads mapping to multiple genes
3.2 years ago by Marco Pannone ▴ 810
0
votes
0
replies
1.4k
views
Comment: Comment: Correlation Network with Cytoscape
3.2 years ago by Marco Pannone ▴ 810
6
votes
3
replies
1.4k
views
Forum: Computational Biology Conference
biology computational science research conference
updated 3.2 years ago by 47k • written 3.2 years ago by ▴ 810
1
vote
0
replies
2.6k
views
Comment: Comment: how to find each cluster in single-cell represent which cell type?
3.2 years ago by Marco Pannone ▴ 810
0
votes
0
replies
1.2k
views
Comment: Comment: How to get DEGs compare one sample to another?
3.3 years ago by Marco Pannone ▴ 810
1
vote
1
reply
1.0k
views
Answer: Answer: Gene Ontology
3.3 years ago by Marco Pannone ▴ 810
0
votes
0
replies
1.8k
views
Comment: Comment: Problem extracting differentially expressed genes using diffxpy
3.3 years ago by Marco Pannone ▴ 810
194 results • Page 3 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6