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3
votes
8
replies
5.9k
views
bedtools getfasta does not give a proper fasta output
fasta bedtools
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 1.5k
1
vote
3
replies
3.4k
views
How can we extract the alignment coordinates and gap coordinates in BLAT PSL?
Blat sequence-alignment
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 1.5k
0
votes
0
replies
1.8k
views
Answer: A: Any pre-processing needed before annotate the transcripts?
updated 5.0 years ago by 44k • written 9.1 years ago by ★ 1.5k
0
votes
0
replies
11k
views
Comment: C: Compare A Denovo Assembly To The Reference Genome
updated 5.1 years ago by 44k • written 10.9 years ago by ★ 1.5k
0
votes
0
replies
2.4k
views
Comment: C: Tool to do Variant calling from contigs data
6.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
2.3k
views
Comment: C: How to use pacbio reads to join contigs
6.6 years ago by Rohit ★ 1.5k
0
votes
0
replies
4.4k
views
Comment: C: short RNA reads alignment
6.6 years ago by Rohit ★ 1.5k
2
votes
1
reply
2.4k
views
Comment: C: Variant calling in genomic chunks
6.6 years ago by Rohit ★ 1.5k
0
votes
0
replies
2.8k
views
Comment: C: Judging best assembly
6.6 years ago by Rohit ★ 1.5k
0
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0
replies
3.5k
views
Comment: C: k-mer optimization in Trinity
6.6 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.8k
views
Answer: A: Judging best assembly
6.6 years ago by Rohit ★ 1.5k
0
votes
0
replies
1.9k
views
Answer: A: Help with finding gene families in genome
6.6 years ago by Rohit ★ 1.5k
0
votes
2
replies
3.9k
views
Comment: C: How to combine multiple tools to detct SVs in WES data
6.7 years ago by Rohit ★ 1.5k
0
votes
1
reply
3.9k
views
Answer: A: How to combine multiple tools to detct SVs in WES data
6.7 years ago by Rohit ★ 1.5k
0
votes
1
reply
3.7k
views
Comment: C: bedtools closest - result for only the first query
6.7 years ago by Rohit ★ 1.5k
0
votes
1
reply
3.7k
views
Comment: C: bedtools closest - result for only the first query
6.7 years ago by Rohit ★ 1.5k
0
votes
0
replies
1.4k
views
Answer: A: Strategy for genome annotation for a new individual of a well-established specie
6.7 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.4k
views
Answer: A: help to do genome assembly
6.7 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.2k
views
Comment: C: How can I right align InDels ?
7.4 years ago by Rohit ★ 1.5k
1
vote
0
replies
5.2k
views
Comment: C: Assembling PacBio reads using a reference genome
7.4 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.8k
views
Answer: C: empty SAM file
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.4k
views
Comment: C: Closest gene to set of intervals
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.4k
views
Comment: C: LASTZ does not accept/like "-" (dash) in Fasta file
7.4 years ago by Rohit ★ 1.5k
1
vote
0
replies
3.4k
views
Comment: C: LASTZ does not accept/like "-" (dash) in Fasta file
7.4 years ago by Rohit ★ 1.5k
0
votes
1
reply
3.4k
views
Answer: A: Closest gene to set of intervals
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.1k
views
Comment: C: Help with finding introns
7.4 years ago by Rohit ★ 1.5k
0
votes
1
reply
3.1k
views
Comment: C: Help with finding introns
7.4 years ago by Rohit ★ 1.5k
1
vote
0
replies
3.2k
views
Comment: C: Gene lists and calculated Ka/Ks ratio per gene
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
5.0k
views
Comment: C: trying to use gnu parallel and blast
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
15k
views
Comment: C: Twobittofa download and install link?
7.4 years ago by Rohit ★ 1.5k
0
votes
1
reply
2.1k
views
Comment: C: Streptococcus genome alignments
7.4 years ago by Rohit ★ 1.5k
0
votes
1
reply
5.0k
views
Comment: C: trying to use gnu parallel and blast
7.4 years ago by Rohit ★ 1.5k
2
votes
0
replies
1.3k
views
Comment: C: Obtain all ncDNA sequences using a GTF
7.4 years ago by Rohit ★ 1.5k
1
vote
0
replies
2.0k
views
Answer: C: Need suggestions on transcriptome data
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
2.8k
views
Comment: C: Rescaffolding a genome assembly?
7.4 years ago by Rohit ★ 1.5k
1
vote
1
reply
2.8k
views
Comment: C: Rescaffolding a genome assembly?
7.4 years ago by Rohit ★ 1.5k
2
votes
0
replies
1.9k
views
Answer: A: Structural variants calling in a population
7.4 years ago by Rohit ★ 1.5k
0
votes
0
replies
12k
views
Comment: C: Microrna Pipeline
7.5 years ago by Rohit ★ 1.5k
0
votes
0
replies
1.6k
views
Answer: A: Finding fragemented transcriptome
7.5 years ago by Rohit ★ 1.5k
0
votes
0
replies
2.8k
views
Answer: A: Calculate reads and paired inserts covering a junction
7.5 years ago by Rohit ★ 1.5k
2
votes
1
reply
2.5k
views
Answer: A: How to preform genome annotation?
7.5 years ago by Rohit ★ 1.5k
1
vote
0
replies
6.5k
views
Answer: A: How to perform bidirectional BLAST?
7.5 years ago by Rohit ★ 1.5k
2
votes
1
reply
5.3k
views
Answer: A: Preparation for Bioinformatics.SE closing
7.5 years ago by Rohit ★ 1.5k
1
vote
0
replies
1.7k
views
Answer: A: Best ortholog/inparalog detection between human genes and species from different
7.5 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.4k
views
Comment: C: Getting avg gene length from GTF (for all splice isoforms)
7.5 years ago by Rohit ★ 1.5k
1
vote
1
reply
3.4k
views
Answer: C: Getting avg gene length from GTF (for all splice isoforms)
7.5 years ago by Rohit ★ 1.5k
0
votes
0
replies
4.6k
views
Comment: C: format uniprot fasta headers
7.6 years ago by Rohit ★ 1.5k
0
votes
1
reply
4.6k
views
Comment: C: format uniprot fasta headers
7.6 years ago by Rohit ★ 1.5k
0
votes
0
replies
3.0k
views
Comment: C: Clustering PacBio CCS reads
7.6 years ago by Rohit ★ 1.5k
0
votes
1
reply
4.7k
views
Comment: C: Modification of fastq header
7.6 years ago by Rohit ★ 1.5k
241 results • Page 1 of 5
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