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Comment: Comment: Convert a Seurat object to .h5ad file
2.2 years ago by gaelgarcia05 ▴ 280
17
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6
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32k
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Convert a Seurat object to .h5ad file
single-cell RNA-Seq seurat R scanpy
2.2 years ago by gaelgarcia05 ▴ 280
0
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0
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1.7k
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Comment: Comment: Question: DESeq2 multiple factor design
3.0 years ago by gaelgarcia05 ▴ 280
3
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0
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32k
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Comment: C: Convert a Seurat object to .h5ad file
5.3 years ago by gaelgarcia05 ▴ 280
0
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0
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16k
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Answer: A: how to produce plots like this in R
5.9 years ago by gaelgarcia05 ▴ 280
0
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0
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14k
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Comment: C: Finding Variable Genes in Seurat, scRNA-seq
6.2 years ago by gaelgarcia05 ▴ 280
3
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2
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3.5k
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Full list of KING options and paramenters
KING PLINK IBD kinship relatedness
updated 6.4 years ago by • 0 • written 6.6 years ago by ▴ 280
4
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3
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2.4k
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Compare allele frequency of SNPs in my data to their allele frequency in different human populations - ExAC vs 1000 Genomes vs Other?
snp ExAC 1000Genomes MAF sequencing
6.5 years ago by gaelgarcia05 ▴ 280
0
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1
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2.4k
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Comment: C: Compare allele frequency of SNPs in my data to their allele frequency in differe
6.5 years ago by gaelgarcia05 ▴ 280
0
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0
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32k
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Comment: C: How To Find Major And Minor Alleles From Dbsnp ?
6.5 years ago by gaelgarcia05 ▴ 280
0
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1
reply
3.1k
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Comment: C: tools to calculate Exac population specific frequency
6.5 years ago by gaelgarcia05 ▴ 280
0
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0
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55k
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Comment: C: Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KI
6.5 years ago by gaelgarcia05 ▴ 280
0
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0
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36k
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Comment: C: How To Convert Vcf File To Plink Ped Format?
6.5 years ago by gaelgarcia05 ▴ 280
1
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3
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55k
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Comment: C: Converting VCF to PLINK .bed binary fileset: How do the different tools availabl
6.5 years ago by gaelgarcia05 ▴ 280
0
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1
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55k
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Comment: C: Converting VCF to PLINK .bed binary fileset: How do the different tools availabl
6.5 years ago by gaelgarcia05 ▴ 280
0
votes
1
reply
55k
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Comment: C: Converting VCF to PLINK .bed binary fileset: How do the different tools availabl
6.6 years ago by gaelgarcia05 ▴ 280
1
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0
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55k
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Comment: C: Converting VCF to PLINK .bed binary fileset: How do the different tools availabl
6.6 years ago by gaelgarcia05 ▴ 280
0
votes
0
replies
55k
views
Comment: C: Converting VCF to PLINK .bed binary fileset: How do the different tools availabl
6.6 years ago by gaelgarcia05 ▴ 280
0
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2
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55k
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Comment: C: Converting VCF to PLINK .bed binary fileset: How do the different tools availabl
6.6 years ago by gaelgarcia05 ▴ 280
0
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0
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2.6k
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Comment: C: VariantsToBinaryPed tool missing from GATK4?
6.6 years ago by gaelgarcia05 ▴ 280
2
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6
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2.6k
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VariantsToBinaryPed tool missing from GATK4?
gatk gatk4 gatk3 plink king
6.6 years ago by gaelgarcia05 ▴ 280
0
votes
1
reply
3.3k
views
Adjust ulimit open file handle limit on Mac OS X Sierra for GATK
gatk macosx ulimit gatk3 unix
updated 6.6 years ago by 36k • written 6.6 years ago by ▴ 280
0
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1
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2.6k
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Comment: C: VariantsToBinaryPed tool missing from GATK4?
6.6 years ago by gaelgarcia05 ▴ 280
0
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0
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2.6k
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Comment: C: VariantsToBinaryPed tool missing from GATK4?
6.6 years ago by gaelgarcia05 ▴ 280
3
votes
1
reply
3.5k
views
Answer: A: Full list of KING options and paramenters
6.6 years ago by gaelgarcia05 ▴ 280
0
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1
reply
4.0k
views
Comment: C: Cannot run or build KING on Mac OS X
6.6 years ago by gaelgarcia05 ▴ 280
3
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6
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4.0k
views
Cannot run or build KING on Mac OS X
KING PLINK IBD dylib error
6.6 years ago by gaelgarcia05 ▴ 280
0
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1
reply
4.0k
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Comment: C: Cannot run KING on Mac OS X
6.6 years ago by gaelgarcia05 ▴ 280
0
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0
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55k
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Comment: C: VCF to PLINK binary formats: How do conversion tools make the .fam file if no re
6.6 years ago by gaelgarcia05 ▴ 280
10
votes
5
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15k
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Why Am I Getting So Many Unmapped Reads In Star, Classified As "Too Short"?
RNA-seq STAR
updated 23 months ago by 44k • written 11.5 years ago by ▴ 280
6
votes
3
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5.7k
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Estimating Dispersions In Deseq: Which Is Best, All Conditions At Once, Or Each Condition Comparison Individually?
deseq rna-seq r edger bioconductor
updated 8.1 years ago by 20 • written 11.6 years ago by ▴ 280
0
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1
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3.1k
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How Do Tophat Options -G , --Supress-Hits, And Bowtie Options Interplay?
rnaseq rna-seq tophat tophat2 bowtie
updated 9.1 years ago by ▴ 20 • written 11.5 years ago by ▴ 280
2
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1
reply
3.2k
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What Happened To -K In Tophat For Multiple-Mapping Reads?
multiple-alignment tophat2 rna-seq tophat
updated 3.2 years ago by 44k • written 11.5 years ago by ▴ 280
6
votes
3
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5.6k
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Does Tophat Use The Library-Type Information For Mapping, Or Just For The Xs Flag?
tophat rna-seq rnaseq mapping reads
updated 11.2 years ago by ▴ 450 • written 11.5 years ago by ▴ 280
0
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0
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3.2k
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Answer: A: Which Strand Of The Mrna Molecule Does The Sequencer Output As A "Read"?
11.5 years ago by gaelgarcia05 ▴ 280
3
votes
4
replies
3.2k
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Which Strand Of The Mrna Molecule Does The Sequencer Output As A "Read"?
illumina rna-seq
11.5 years ago by gaelgarcia05 ▴ 280
0
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0
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4.0k
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Comment: C: When Using Deseq Does One Need To Estimate The Size Factor And Dispersion For Ea
11.5 years ago by gaelgarcia05 ▴ 280
0
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0
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3.2k
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Comment: C: Which Strand Of The Mrna Molecule Does The Sequencer Output As A "Read"?
11.5 years ago by gaelgarcia05 ▴ 280
1
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0
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13k
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Comment: C: Fastqc Html Report To Pdf (With A Script)
11.5 years ago by gaelgarcia05 ▴ 280
0
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0
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5.6k
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Comment: C: Does Tophat Use The Library-Type Information For Mapping, Or Just For The Xs Fla
11.5 years ago by gaelgarcia05 ▴ 280
0
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1
reply
8.7k
views
Purpose Of Y-Shaped Adapters In Illumina Sequencing?
illumina adaptor sequencing rna-seq
11.5 years ago by gaelgarcia05 ▴ 280
0
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0
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13k
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Comment: C: Tophat Library Type And Pair Orientation For Illumina Data
11.5 years ago by gaelgarcia05 ▴ 280
2
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2
replies
3.3k
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Deseq Standard Comparison Or Multifactorial / Model Fitting?
deseq rnaseq rna-seq r statistics
11.6 years ago by gaelgarcia05 ▴ 280
0
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0
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3.3k
views
Comment: C: Deseq Standard Comparison Or Multifactorial / Model Fitting?
11.6 years ago by gaelgarcia05 ▴ 280
0
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0
replies
5.7k
views
Comment: C: Estimating Dispersions In Deseq: Which Is Best, All Conditions At Once, Or Each
11.6 years ago by gaelgarcia05 ▴ 280
0
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0
replies
3.5k
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Comment: C: Split A Bam File Into Smaller Files By Tile Number
11.6 years ago by gaelgarcia05 ▴ 280
0
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0
replies
3.5k
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Comment: C: Split A Bam File Into Smaller Files By Tile Number
11.6 years ago by gaelgarcia05 ▴ 280
0
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0
replies
3.5k
views
Comment: C: Split A Bam File Into Smaller Files By Tile Number
11.6 years ago by gaelgarcia05 ▴ 280
2
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6
replies
3.5k
views
Split A Bam File Into Smaller Files By Tile Number
samtools tophat
updated 11.6 years ago by 164k • written 11.6 years ago by ▴ 280
6
votes
10
replies
8.6k
views
Split A Bam File Into Several Files Containing All The Alignments For X Number Of Reads.
bam sam rna-seq unix bwa tophat bedtools
updated 11.6 years ago by ▴ 690 • written 11.6 years ago by ▴ 280
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