Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.6k
views
Comment: C: Get transcript sequence from RNA-seq
8.3 years ago by colin.kern ★ 1.1k
0
votes
2
replies
2.6k
views
Get transcript sequence from RNA-seq
RNA-Seq
updated 8.3 years ago by ★ 4.0k • written 8.3 years ago by ★ 1.1k
4
votes
1
reply
3.1k
views
Tophat align_summary.txt and samtools flagstat accepted_hits.bam disagree
RNA-Seq tophat alignment samtools
updated 8.5 years ago by 104k • written 8.5 years ago by ★ 1.1k
0
votes
2
replies
2.7k
views
ChIP-seq Genome Coverage
ChIP-Seq genome
8.7 years ago by colin.kern ★ 1.1k
0
votes
1
reply
9.6k
views
Comment: C: Split BAM file into two subsamples
8.8 years ago by colin.kern ★ 1.1k
0
votes
0
replies
9.6k
views
Comment: C: Split BAM file into two subsamples
8.8 years ago by colin.kern ★ 1.1k
3
votes
3
replies
2.4k
views
Stop BLAST search on any hit
blast alignment
updated 2.3 years ago by 44k • written 9.0 years ago by ★ 1.1k
0
votes
1
reply
1.9k
views
Comment: C: Cuffcompare or Cuffmerge for tissue specificity?
9.0 years ago by colin.kern ★ 1.1k
0
votes
0
replies
2.4k
views
Comment: C: Stop BLAST search on any hit
9.0 years ago by colin.kern ★ 1.1k
0
votes
3
replies
1.9k
views
Cuffcompare or Cuffmerge for tissue specificity?
RNA-Seq cufflinks
updated 9.0 years ago by ▴ 700 • written 9.0 years ago by ★ 1.1k
1
vote
0
replies
4.7k
views
Comment: C: Bowtie alignment after adapter removal with trimmomatic
9.0 years ago by colin.kern ★ 1.1k
0
votes
0
replies
1.6k
views
How is Tophat producing more alignments than input reads?
RNA-Seq tophat samtools
9.2 years ago by colin.kern ★ 1.1k
9
votes
17
replies
16k
views
Can't convert paired end BAM to bed using bedtools
alignment bedtools bam
updated 23 months ago by 44k • written 9.4 years ago by ★ 1.1k
0
votes
1
reply
3.0k
views
Answer: A: Why cufflinks package merge more than one gene name in the same transcript?
9.3 years ago by colin.kern ★ 1.1k
0
votes
0
replies
8.5k
views
Comment: C: Difference between Ensembl annotation GTF and GFF3 files
9.3 years ago by colin.kern ★ 1.1k
0
votes
1
reply
8.5k
views
Comment: C: Difference between Ensembl annotation GTF and GFF3 files
9.3 years ago by colin.kern ★ 1.1k
0
votes
1
reply
2.2k
views
Scaffold name mapping between NCBI and Ensembl
Assembly genome ncbi ensembl
updated 9.4 years ago by 24k • written 9.4 years ago by ★ 1.1k
0
votes
1
reply
16k
views
Comment: Comment: Can't convert paired end BAM to bed using bedtools
updated 23 months ago by 44k • written 9.4 years ago by ★ 1.1k
0
votes
1
reply
16k
views
Comment: C: Can't convert paired end BAM to bed using bedtools
9.4 years ago by colin.kern ★ 1.1k
0
votes
1
reply
16k
views
Comment: Comment: Can't convert paired end BAM to bed using bedtools
updated 23 months ago by 44k • written 9.4 years ago by ★ 1.1k
0
votes
1
reply
3.5k
views
Comment: C: Is combining fastq files before running tophat the same as combining bam file ou
9.4 years ago by colin.kern ★ 1.1k
2
votes
3
replies
3.5k
views
Is combining fastq files before running tophat the same as combining bam file output from tophat?
RNA-Seq tophat
updated 23 months ago by 44k • written 9.4 years ago by ★ 1.1k
7
votes
1
reply
3.1k
views
Get # of unique mapped reads from Tophat output
RNA-Seq Tophat
updated 9.4 years ago by 104k • written 9.4 years ago by ★ 1.1k
123 results • Page 3 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6