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182
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Calculating if cell proportions are significant using propeller
regression proportions scRNA-seq
9 weeks ago by mropri ▴ 160
0
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0
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598
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
3 months ago by mropri ▴ 160
0
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0
replies
836
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
4 months ago by mropri ▴ 160
0
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1
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836
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Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
4 months ago by mropri ▴ 160
0
votes
0
replies
836
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
4 months ago by mropri ▴ 160
0
votes
1
reply
836
views
Comment: Comment: Before doing pseudobulk, should we get rid of genes that are only expressed in a
4 months ago by mropri ▴ 160
1
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7
replies
836
views
Before doing pseudobulk, should we get rid of genes that are only expressed in a small number of cells?
DESeq2 scRNAseq Pseudobulk
4 months ago by mropri ▴ 160
0
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0
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631
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
4 months ago by mropri ▴ 160
0
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1
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631
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Comment: Comment: How to account for total number of cells when aggregating for pseudobulk?
4 months ago by mropri ▴ 160
3
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5
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631
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How to account for total number of cells when aggregating for pseudobulk?
Pseudobulk
updated 4 months ago by 85k • written 4 months ago by ▴ 160
0
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0
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863
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Comment: Comment: Why does DESeq2 give negative log2 fold change in treatment vs control for some
5 months ago by mropri ▴ 160
2
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2
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863
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Why does DESeq2 give negative log2 fold change in treatment vs control for some genes when normalized counts are higher in treatment? (Already checke…
DESeq2
5 months ago by mropri ▴ 160
0
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0
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620
views
Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
6 months ago by mropri ▴ 160
0
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3
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620
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Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
6 months ago by mropri ▴ 160
0
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0
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620
views
Comment: Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
updated 6 months ago by 147k • written 6 months ago by ▴ 160
0
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0
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520
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Comment: Comment: Wilcox test using data slot (log normalized count values) of scRNA-seq between t
7 months ago by mropri ▴ 160
0
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2
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520
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Wilcox test using data slot (log normalized count values) of scRNA-seq between two groups
scRNAseq
7 months ago by mropri ▴ 160
0
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1
reply
598
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Comment: Comment: Calculating percentage of cells proliferating in single cell rna seq data
7 months ago by mropri ▴ 160
0
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4
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598
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Calculating percentage of cells proliferating in single cell rna seq data
statistics scRNA-seq proliferation
3 months ago by mropri ▴ 160
0
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2
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2.5k
views
ROSE Algorithm for Ranking Super Enhancers
ChIP-Seq
updated 9 months ago by 44k • written 4.4 years ago by ▴ 160
0
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0
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1.1k
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Comment: Comment: Is it necessary to integrate again samples when subclustering
10 months ago by mropri ▴ 160
0
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2
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1.1k
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Is it necessary to integrate again samples when subclustering
scRNA-seq integration Single-cell
updated 10 months ago by 44k • written 10 months ago by ▴ 160
0
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0
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1.0k
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Comment: Comment: Single Cell RNA-seq analysis one by one vs all together
10 months ago by mropri ▴ 160
0
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0
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274
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Running MultiK on one single cell sample, is it that memory intensive
MultiK Single-Cell
updated 10 months ago by 44k • written 10 months ago by ▴ 160
0
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2
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1.0k
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Single Cell RNA-seq analysis one by one vs all together
scRNA-seq single-cell
10 months ago by mropri ▴ 160
0
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0
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339
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Check if BAMboozle anonymized bam files
BAMboozle
17 months ago by mropri ▴ 160
0
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0
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1.2k
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Comment: Comment: BAMboozle
18 months ago by mropri ▴ 160
0
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0
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1.0k
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Comment: Comment: Picard ribosome intervals list
18 months ago by mropri ▴ 160
0
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1
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1.2k
views
Comment: Comment: BAMboozle
18 months ago by mropri ▴ 160
0
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0
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1.2k
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Comment: Comment: BAMboozle
18 months ago by mropri ▴ 160
0
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2
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1.2k
views
Comment: Comment: BAMboozle
updated 18 months ago by 101k • written 18 months ago by ▴ 160
0
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8
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1.2k
views
BAMboozle
BAMboozle
18 months ago by mropri ▴ 160
0
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1
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1.0k
views
Comment: Comment: Picard ribosome intervals list
updated 18 months ago by 147k • written 18 months ago by ▴ 160
0
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3
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1.0k
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Picard ribosome intervals list
Picard
18 months ago by mropri ▴ 160
0
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1
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1.6k
views
Cannot install limma
bioconductor limma
updated 19 months ago by ▴ 610 • written 19 months ago by ▴ 160
0
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0
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1.5k
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Comment: Comment: Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
19 months ago by mropri ▴ 160
0
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0
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1.5k
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Comment: Comment: I am trying to get an older version of SVA (Surrogate Variable Analysis) in R us
19 months ago by mropri ▴ 160
2
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6
replies
1.5k
views
Older version of SVA (Surrogate Variable Analysis) in R using Bioconductor?
Bioconductor SVA
19 months ago by mropri ▴ 160
1
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0
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613
views
Comment: Comment: Power analysis for patient samples
20 months ago by mropri ▴ 160
3
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2
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613
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Power analysis for patient samples
RNA-seq
20 months ago by mropri ▴ 160
0
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0
replies
1.5k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
21 months ago by mropri ▴ 160
0
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0
replies
1.5k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
21 months ago by mropri ▴ 160
6
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6
replies
1.5k
views
Use single cell sequencing bam file to tell if a patient has a mutation
Cell Single RNA sequencing
21 months ago by mropri ▴ 160
0
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1
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1.5k
views
Comment: Comment: Use single cell sequencing bam file to tell if a patient has a mutation
21 months ago by mropri ▴ 160
0
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0
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950
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Comment: Comment: GO analysis where I can set by own set of genes to search against
2.1 years ago by mropri ▴ 160
0
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0
replies
950
views
Comment: Comment: GO analysis where I can set by own set of genes to search against
2.1 years ago by mropri ▴ 160
0
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2
replies
950
views
Comment: Comment: GO analysis where I can set by own set of genes to search against
2.1 years ago by mropri ▴ 160
0
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6
replies
950
views
GO analysis where I can set by own set of genes to search against
Analysis GO
2.1 years ago by mropri ▴ 160
2
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5
replies
1.5k
views
Sabre demultiplexer
demultiplexing Sabre RNA-seq
updated 2.2 years ago by 147k • written 2.5 years ago by ▴ 160
0
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0
replies
494
views
Corr.test method
Correlation corr.test r
2.3 years ago by mropri ▴ 160
141 results • Page 1 of 3
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