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Comment: Comment: counting number of CpGs that are methylated and unmethylated in a read of whole
8 weeks ago by Ömer An ▴ 260
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2.4k
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Comment: Comment: fusion detection for DNA Sequencing data
10 weeks ago by Ömer An ▴ 260
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1.6k
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Comment: Comment: cnvkit Error message "length of weights should be the same as the number of prob
12 weeks ago by Ömer An ▴ 260
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10.0k
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Answer: Answer: What Is The Meaning Of Snp Strand
5 months ago by Ömer An ▴ 260
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16k
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Answer: Answer: How to download dbSNP153 vcf files in hg19/GRCH37 version
5 months ago by Ömer An ▴ 260
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14k
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Comment: Comment: MAF vs VAF
8 months ago by Ömer An ▴ 260
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42k
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Answer: Answer: Converting a VCF with SNPs and indels to BED format
19 months ago by Ömer An ▴ 260
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6.7k
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Answer: Answer: Extract UMIs using UMI-tools
24 months ago by Ömer An ▴ 260
7
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5
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7.1k
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6 follow
How to access GeneCards via XML?
GeneCards XML
updated 2.8 years ago by ★ 9.5k • written 10.5 years ago by ▴ 260
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56k
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Comment: Comment: How to extract sample id using bcftools or vcftools
3.3 years ago by Ömer An ▴ 260
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33k
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Comment: C: Batch correction in DESeq2
4.0 years ago by Ömer An ▴ 260
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1
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109k
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Comment: C: How to plot coverage and depth statistics of a bam file
4.2 years ago by Ömer An ▴ 260
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5.5k
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Comment: C: CellRanger Make Counts Expected Cells
4.3 years ago by Ömer An ▴ 260
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12k
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Comment: C: correcting for a batch in DESeq2
4.4 years ago by Ömer An ▴ 260
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0
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12k
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Comment: C: STAR or Bowtie for small RNA seq?
4.5 years ago by Ömer An ▴ 260
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1
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5.0k
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Comment: C: best STAR options for miRNA mapping?
4.5 years ago by Ömer An ▴ 260
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5.7k
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Comment: C: Cellranger count fails at mapping
4.6 years ago by Ömer An ▴ 260
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1
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6.3k
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Answer: A: software of single-cell RNA-seq from fastq or fasta
4.6 years ago by Ömer An ▴ 260
1
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1
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14k
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Comment: C: How to download mm10 GTF file with the gene id and gene name using UCSC table br
4.8 years ago by Ömer An ▴ 260
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1
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5.1k
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Comment: A: How to analyze the RNAseq paired samples with DESeq2?
4.8 years ago by Ömer An ▴ 260
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9.8k
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Answer: A: input for rMATS
4.9 years ago by Ömer An ▴ 260
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0
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8.7k
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Answer: A: How to merge multiple single cell sequencing data after processing by CellRanger
4.9 years ago by Ömer An ▴ 260
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53k
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Answer: A: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
4.9 years ago by Ömer An ▴ 260
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0
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1.3k
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Answer: A: RNAfold with batch constraints
5.0 years ago by Ömer An ▴ 260
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0
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14k
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Answer: A: How to install gdc-client in Ubnutu
5.1 years ago by Ömer An ▴ 260
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1.4k
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Comment: C: Find 12-mer not mapping to the human genome
5.1 years ago by Ömer An ▴ 260
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0
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9.8k
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Comment: C: input for rMATS
5.5 years ago by Ömer An ▴ 260
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0
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9.8k
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Comment: C: input for rMATS
5.5 years ago by Ömer An ▴ 260
0
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1
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9.8k
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Comment: C: input for rMATS
5.5 years ago by Ömer An ▴ 260
0
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0
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14k
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Comment: C: How many genes to include for a GSEA analysis
5.5 years ago by Ömer An ▴ 260
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1
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3.5k
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Comment: C: DESeq2: unable to allocate memory error
5.6 years ago by Ömer An ▴ 260
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0
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4.9k
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Answer: A: TCGA BRCA sample_type blood derived normal?
5.8 years ago by Ömer An ▴ 260
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5.1k
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Comment: C: Getting error in running rMATS
6.0 years ago by Ömer An ▴ 260
5
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1
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56k
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Answer: A: how to extract sample id with bcftools or vcftools
updated 6.0 years ago by 12k • written 6.7 years ago by ▴ 260
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0
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9.1k
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Comment: Comment: Splicing factor database
updated 2.2 years ago by 44k • written 6.2 years ago by ▴ 260
1
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1
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2.6k
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circRNA-Seq analysis tools
circRNA-Seq circrna
updated 6.2 years ago by ▴ 770 • written 6.3 years ago by ▴ 260
2
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3
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1.4k
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Find 12-mer not mapping to the human genome
mapping alignment sequencing sequence
updated 6.2 years ago by 11k • written 6.2 years ago by ▴ 260
1
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0
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73k
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Comment: C: VCF files: Change Chromosome Notation
6.3 years ago by Ömer An ▴ 260
1
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2
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68k
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Comment: C: How To Convert Gencode Gtf Into Bed Format ?
6.6 years ago by Ömer An ▴ 260
1
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0
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2.8k
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Answer: A: Training dataset for NGS HLA typing (reads >200bp from PCR amplicons)
6.7 years ago by Ömer An ▴ 260
1
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0
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19k
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Answer: A: Software For Hla Typing Using Ngs?
6.7 years ago by Ömer An ▴ 260
0
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0
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24k
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Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
6.8 years ago by Ömer An ▴ 260
0
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0
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5.1k
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Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
6.9 years ago by Ömer An ▴ 260
0
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1
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5.1k
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Comment: C: Script for analyzing idat (illumina) microarray files with limma, any suggestion
6.9 years ago by Ömer An ▴ 260
0
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0
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56k
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Comment: C: How To Download All Sra Samples At Once ?
7.3 years ago by Ömer An ▴ 260
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0
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30k
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Comment: C: Extract Sequence From Fasta File Using Ids From A Separate File
7.6 years ago by Ömer An ▴ 260
2
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1
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4.3k
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Homozygous/Heterozygous Deletions (Copy Number Variation) in TCGA
cnv TCGA
updated 7.7 years ago by • 0 • written 10.6 years ago by ▴ 260
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0
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15k
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Comment: C: FastQ quality check : what can we correct ?
8.0 years ago by Ömer An ▴ 260
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0
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11k
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Comment: C: Paired End Trimmomatic producing asymmetric paired read files.
8.3 years ago by Ömer An ▴ 260
1
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0
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101k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
8.5 years ago by Ömer An ▴ 260
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