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5
votes
2
replies
9.4k
views
Answer: A: ChIP seq- input DNA control for normalization
8.7 years ago by Michele Busby ★ 2.2k
0
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0
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5.7k
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Comment: Comment: Marking Duplicates With Molecular Tag (Umi)
updated 2.3 years ago by 44k • written 8.8 years ago by ★ 2.2k
1
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0
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7.7k
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Comment: Comment: Single cell RNAseq - how many cells enough to determine DE?
updated 2.7 years ago by 44k • written 8.9 years ago by ★ 2.2k
0
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0
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4.3k
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Comment: C: DESeq2 for differential expression analysis of RNA-seq datawith few samples per
9.1 years ago by Michele Busby ★ 2.2k
0
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0
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4.2k
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Answer: A: RSEM failed on miRNA read dataset
9.1 years ago by Michele Busby ★ 2.2k
0
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0
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3.5k
views
Comment: Comment: High School Researcher: Is it possible to gain access to publicly available whol
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 2.2k
1
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0
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6.6k
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Comment: C: Many overrepresented sequences in RNA-seq data. Should them be trimmed out?
9.2 years ago by Michele Busby ★ 2.2k
2
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1
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2.3k
views
Answer: Answer: Joint analysis of public RNA-seq samples coming from different extraction protoc
updated 2.2 years ago by 44k • written 9.2 years ago by ★ 2.2k
0
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1
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3.1k
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Comment: C: How to do sequencing reads technical analysis and biological quality analysis fo
9.2 years ago by Michele Busby ★ 2.2k
1
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0
replies
1.9k
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Answer: Answer: qulity control of RNA-seq results
updated 22 months ago by 44k • written 9.5 years ago by ★ 2.2k
4
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1
reply
6.4k
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Answer: A: Is Smith Waterman ever used?
9.5 years ago by Michele Busby ★ 2.2k
3
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0
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7.7k
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Comment: Comment: How much paired end vs single end RNA-seq reads can have influnce on expression
updated 21 months ago by 44k • written 9.5 years ago by ★ 2.2k
2
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0
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3.2k
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Answer: Answer: RNA-seq: how big should be the library?
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
1
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0
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5.9k
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Comment: Comment: tRNA expression analysis from RNA-Seq
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
0
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0
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2.5k
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Comment: C: Very different result from chip-sea data between mm9 and mm10 using galaxy. Is t
9.6 years ago by Michele Busby ★ 2.2k
1
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1
reply
15k
views
Comment: Comment: Normalization Of Rna Sequencing Counts (By Ercc / Gene Length)
updated 2.4 years ago by 44k • written 9.6 years ago by ★ 2.2k
1
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1
reply
6.2k
views
Answer: Answer: How stranded is stranded RNA-Seq (TruSeq) protocol?
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
6
votes
0
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18k
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Answer: Answer: How Do I Get Started Working With Rna-Seq Data
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
0
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0
replies
13k
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Comment: C: Ribosomal Intervals For Collectrnaseqmetrics
9.7 years ago by Michele Busby ★ 2.2k
0
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0
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6.9k
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Answer: Answer: How to remove probably ribosomal RNA in mRNA-seq data derived from Illumina sequ
updated 2.5 years ago by 44k • written 9.7 years ago by ★ 2.2k
1
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0
replies
3.6k
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Comment: Comment: RNA-Seq comparing transcript levels between samples and between experimental run
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 2.2k
0
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0
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4.3k
views
Answer: Answer: Quality control & Processing of RNA seq data
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 2.2k
2
votes
1
reply
7.7k
views
Comment: Comment: Single cell RNAseq - how many cells enough to determine DE?
updated 2.7 years ago by 44k • written 9.9 years ago by ★ 2.2k
3
votes
0
replies
5.8k
views
Comment: Comment: hello I know I must accept that im a stupid
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.2k
4
votes
1
reply
5.8k
views
Comment: Comment: hello I know I must accept that im a stupid
updated 2.7 years ago by 44k • written 10.0 years ago by ★ 2.2k
0
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0
replies
4.8k
views
Answer: A: How to import a big matrix into matlab?
10.0 years ago by Michele Busby ★ 2.2k
0
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0
replies
21k
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Comment: Comment: Advice on RNASeq analysis without biological replicates for differential gene ex
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
0
votes
0
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21k
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Comment: Comment: Advice on RNASeq analysis without biological replicates for differential gene ex
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
2
votes
0
replies
3.7k
views
Answer: Answer: What are the differences between RNA-Seq and Single Cell RNA Seq with respect to
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
0
votes
2
replies
21k
views
Comment: Comment: Advice on RNASeq analysis without biological replicates for differential gene ex
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 2.2k
1
vote
1
reply
21k
views
Answer: A: Advice on RNASeq analysis without biological replicates for differential gene ex
10.0 years ago by Michele Busby ★ 2.2k
2
votes
0
replies
3.8k
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Comment: Comment: Bioinformatics consultant recommendation needed: mouse RNA-Seq, oncology related
updated 2.8 years ago by 44k • written 10.1 years ago by ★ 2.2k
5
votes
0
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15k
views
Answer: Answer: ChIP-Seq: Calling peaks with replicates
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 2.2k
1
vote
0
replies
12k
views
Comment: Comment: High Duplication Rate of Mapped In RNA-seq
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 2.2k
1
vote
1
reply
22k
views
Comment: Comment: Which software do you use for RNA-seq data quality control?
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 2.2k
0
votes
1
reply
7.2k
views
Comment: Comment: How to calculate standard deviation between replicate in mRNA seq data?
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 2.2k
1
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0
replies
4.7k
views
Answer: Answer: Robustness Of Deseq For Differential Expression Analysis For Rna Seq Data
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 2.2k
0
votes
1
reply
5.7k
views
Comment: Comment: Marking Duplicates With Molecular Tag (Umi)
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 2.2k
0
votes
0
replies
7.9k
views
Comment: Comment: Selecting range of log fold change values for representing differentially expres
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 2.2k
0
votes
0
replies
4.4k
views
Comment: Comment: Normalization of RNASeq read counts without conditions
updated 3.0 years ago by 44k • written 10.4 years ago by ★ 2.2k
3
votes
0
replies
2.3k
views
Answer: Answer: Coverage for sample with many species
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 2.2k
1
vote
1
reply
3.6k
views
Answer: Answer: RNA-Seq library types
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 2.2k
0
votes
0
replies
8.5k
views
Comment: C: Rpkm Or Fpkm For Paired End Data Analyses Of Gene Expression?
10.8 years ago by Michele Busby ★ 2.2k
1
vote
1
reply
7.4k
views
Comment: C: Strategy For Rna Seq Normalization Across Different Tissue Samples With Differen
10.8 years ago by Michele Busby ★ 2.2k
0
votes
0
replies
33k
views
Answer: Answer: Which Bioinformatic Friendly Pipeline Building Framework?
updated 2.8 years ago by 44k • written 10.8 years ago by ★ 2.2k
1
vote
0
replies
3.5k
views
Comment: C: Is It Possible For Orthologous Genes To Exist In One Member Of A Species But Not
10.8 years ago by Michele Busby ★ 2.2k
5
votes
1
reply
3.5k
views
Answer: A: Is It Possible For Orthologous Genes To Exist In One Member Of A Species But Not
10.8 years ago by Michele Busby ★ 2.2k
1
vote
1
reply
15k
views
Comment: C: Normalization Of Rna Sequencing Counts (By Ercc / Gene Length)
10.8 years ago by Michele Busby ★ 2.2k
0
votes
0
replies
4.0k
views
Comment: C: Differential Gene Expression Analysis By Rna-Seq
10.9 years ago by Michele Busby ★ 2.2k
2
votes
1
reply
9.6k
views
Answer: A: Rna-Seq: Treat Samples As Biological Replicates?
10.9 years ago by Michele Busby ★ 2.2k
131 results • Page 2 of 3
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