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4.3k
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Answer: Answer: HaplotypeCaller with --dbsnp does not populate ID column
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.3k
0
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1
reply
6.1k
views
Answer: A: Meaning of Base Alignment Quality (BAQ) 0
updated 3.7 years ago by 44k • written 10.2 years ago by ★ 1.3k
1
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2
replies
7.0k
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Comment: C: Can you add a label key to heatscatter plot in R?
10.2 years ago by Jordan ★ 1.3k
0
votes
1
reply
5.8k
views
Comment: Comment: Why Is Tophat Reporting Secondary Alignments Even When The Option To Do So Is Tu
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 1.3k
0
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0
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3.4k
views
Comment: Comment: Problem generating VCFs from MuTect variant caller
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 1.3k
2
votes
3
replies
3.4k
views
Problem generating VCFs from MuTect variant caller
MuTect vcf variant-calling
updated 2.9 years ago by 44k • written 10.2 years ago by ★ 1.3k
0
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1
reply
9.5k
views
Comment: C: Variant callers for Ion Torrent data?
10.3 years ago by Jordan ★ 1.3k
0
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0
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9.5k
views
Comment: Comment: Variant callers for Ion Torrent data?
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 1.3k
6
votes
5
replies
9.5k
views
Variant callers for Ion Torrent data?
ion-torrent variant-calling
updated 3.0 years ago by 44k • written 10.3 years ago by ★ 1.3k
3
votes
7
replies
4.7k
views
Need help understanding read depth for somaticsniper vcf's
somaticsniper vcf variant-calling depth
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 1.3k
0
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1
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7.3k
views
Comment: C: Need help understading gene representation in IGV browser
10.5 years ago by Jordan ★ 1.3k
3
votes
4
replies
7.3k
views
Need help understading gene representation in IGV browser
gene igv
updated 2.0 years ago by 44k • written 10.5 years ago by ★ 1.3k
1
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0
replies
3.8k
views
Comment: C: Find mismatch and INDEL position
10.5 years ago by Jordan ★ 1.3k
0
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0
replies
3.3k
views
Comment: C: Unexpected Cufflinks output when using .gtf file as guide
10.5 years ago by Jordan ★ 1.3k
2
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1
reply
6.0k
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Answer: A: TCGA barcode (Genome-wide SNP6 dataset)
10.5 years ago by Jordan ★ 1.3k
0
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1
reply
2.5k
views
Comment: C: Is there a way to know which variant caller has been used for calling variants i
10.6 years ago by Jordan ★ 1.3k
2
votes
3
replies
2.5k
views
Is there a way to know which variant caller has been used for calling variants in TCGA?
tcga pipeline variant-calling
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 1.3k
0
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0
replies
8.7k
views
Comment: C: Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
10.6 years ago by Jordan ★ 1.3k
0
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0
replies
8.7k
views
Comment: C: Mark Duplicates from Picard does not seem to recognize my sorted BAM files.
10.6 years ago by Jordan ★ 1.3k
8
votes
4
replies
4.9k
views
How To Identify Large Arrangements And Transposable Elements In Ngs Data?
sequencing ngs transposable elements
updated 10.6 years ago by 18k • written 11.2 years ago by ★ 1.3k
2
votes
8
replies
3.7k
views
Need help using Shrimp2 on paired end color-space SOLiD data.
mapping shrimp2 solid paired-end
updated 3.2 years ago by 44k • written 10.7 years ago by ★ 1.3k
0
votes
0
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3.7k
views
Comment: C: Need help using Shrimp2 on paired end SOLiD data.
10.7 years ago by Jordan ★ 1.3k
0
votes
1
reply
3.3k
views
Comment: C: Random Variance T-Test In R?
10.8 years ago by Jordan ★ 1.3k
0
votes
0
replies
5.5k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.8 years ago by Jordan ★ 1.3k
0
votes
1
reply
5.5k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.8 years ago by Jordan ★ 1.3k
2
votes
11
replies
5.5k
views
Need Help Understanding Segdup File Format And Generating Circos Plots
10.8 years ago by Jordan ★ 1.3k
0
votes
1
reply
5.5k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.8 years ago by Jordan ★ 1.3k
0
votes
1
reply
5.5k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.8 years ago by Jordan ★ 1.3k
0
votes
1
reply
5.5k
views
Comment: C: Need Help Understanding Segdup File Format And Generating Circos Plots
10.8 years ago by Jordan ★ 1.3k
0
votes
0
replies
4.8k
views
Comment: C: How To Get The Number Of Samples And Sample Tcga Id'S That Are Reported In Tcga
10.9 years ago by Jordan ★ 1.3k
10
votes
8
replies
8.2k
views
7 follow
How To Remove Common Variants Present In Two Vcf Files?
vcf variant
updated 10.9 years ago by 14k • written 11.2 years ago by ★ 1.3k
0
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0
replies
6.0k
views
Answer: A: Interpreting Results From Mpileup
10.9 years ago by Jordan ★ 1.3k
0
votes
0
replies
2.7k
views
Answer: A: Quality Control For Cnv Calling
10.9 years ago by Jordan ★ 1.3k
0
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1
reply
6.6k
views
Comment: C: How To Include Biological And Technical Replicates While Using Mirdeep2 For Mirn
10.9 years ago by Jordan ★ 1.3k
0
votes
3
replies
2.9k
views
Svdetect Taking Too Long To Run Or Crashing For Finding Links
sv
updated 3.0 years ago by 44k • written 11.0 years ago by ★ 1.3k
2
votes
0
replies
3.4k
views
Can We Use Multiple Normal Bam Files As Input For Mutect To Generate Vcf Files?
bam vcf variant-calling
updated 11.0 years ago by 20 • written 11.6 years ago by ★ 1.3k
0
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1
reply
6.1k
views
Comment: C: How To Deal With Technical And Biological Replicates With Tophat2 For Rna-Seq Da
11.1 years ago by Jordan ★ 1.3k
6
votes
3
replies
6.1k
views
How To Deal With Technical And Biological Replicates With Tophat2 For Rna-Seq Data
rna-seq tophat2 cuffdiff
updated 11.1 years ago by 104k • written 11.1 years ago by ★ 1.3k
0
votes
0
replies
6.6k
views
Comment: C: Error While Running Cuffdiff On Multiple Bam Files Of A Group
11.1 years ago by Jordan ★ 1.3k
0
votes
1
reply
6.6k
views
Comment: C: Error While Running Cuffdiff On Multiple Bam Files Of A Group
11.1 years ago by Jordan ★ 1.3k
1
vote
4
replies
6.6k
views
Error While Running Cuffdiff On Multiple Bam Files Of A Group
cuffdiff tophat2 rna-seq
updated 11.1 years ago by 164k • written 11.1 years ago by ★ 1.3k
1
vote
0
replies
17k
views
Answer: A: Bwa Mapping Qualities Of 0
updated 11.2 years ago by 102k • written 11.2 years ago by ★ 1.3k
0
votes
0
replies
4.9k
views
Comment: C: How To Identify Large Arrangements And Transposable Elements In Ngs Data?
11.2 years ago by Jordan ★ 1.3k
0
votes
0
replies
3.5k
views
Can Someone Explain The Output Of Bic-Seq
cnv output
11.3 years ago by Jordan ★ 1.3k
2
votes
3
replies
3.8k
views
Problem Generating Copy Number Variants Using Varscan2.
cnv copynumber
updated 11.3 years ago by ▴ 140 • written 11.3 years ago by ★ 1.3k
1
vote
5
replies
4.4k
views
Input Error Using Varscan2.3
error mpileup
updated 11.3 years ago by ▴ 140 • written 11.6 years ago by ★ 1.3k
0
votes
0
replies
3.8k
views
Comment: C: Problem Generating Copy Number Variants Using Varscan2.
11.3 years ago by Jordan ★ 1.3k
2
votes
2
replies
3.7k
views
Why Is The Variant File Produced By Samtools So Large? It Is About ~34G.
samtools mpileup variant-calling vcf
updated 11.4 years ago by 164k • written 11.4 years ago by ★ 1.3k
0
votes
0
replies
3.7k
views
Comment: C: Why Is The Variant File Produced By Samtools So Large? It Is About ~34G.
11.4 years ago by Jordan ★ 1.3k
0
votes
1
reply
8.1k
views
Comment: C: Add Dp Tag To Genotype Field Of Vcf File
11.4 years ago by Jordan ★ 1.3k
184 results • Page 2 of 4
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