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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
3.0 years ago by rpolicastro 13k
1
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1
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3.0k
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Comment: Comment: How to compare expression levels of specific genes between sample groups after g
3.0 years ago by rpolicastro 13k
1
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1
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1.5k
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Answer: Answer: Cell ranger reads do not match Seurat reads
3.1 years ago by rpolicastro 13k
1
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0
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769
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Answer: Answer: Complexity of gene expression data in scRNAseq
3.1 years ago by rpolicastro 13k
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1
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2.9k
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Answer: Answer: Salmon quants command keeps on getting killed
3.1 years ago by rpolicastro 13k
5
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1
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987
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Answer: Answer: some questions about sample, integration and subcluster
3.1 years ago by rpolicastro 13k
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1.7k
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Comment: Comment: TPM for scRNAseq
3.1 years ago by rpolicastro 13k
1
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0
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787
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Answer: Answer: STAR Index
3.1 years ago by rpolicastro 13k
2
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1
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4.2k
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Answer: Answer: STAR alignment speed?
3.1 years ago by rpolicastro 13k
0
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1
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730
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Comment: Comment: Retrieving information from boxplots in R
3.1 years ago by rpolicastro 13k
0
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1
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1.6k
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Comment: Comment: How to deal with high % of reads mapped to multiple loci on STAR?
3.1 years ago by rpolicastro 13k
1
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1
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26k
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Comment: Comment: Greatly speed up conda by using mamba
3.1 years ago by rpolicastro 13k
48
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6
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26k
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Tutorial: Greatly speed up conda by using mamba
software
updated 2.9 years ago by ▴ 50 • written 3.7 years ago by 13k
0
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1
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1.9k
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Comment: Comment: Ensemble file Mus_musculus.GRCm38.dna.primary_assembly.fa.gz unzipping to incorr
3.1 years ago by rpolicastro 13k
1
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1
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2.1k
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Comment: Comment: Does readDGE work with data frames?
3.1 years ago by rpolicastro 13k
1
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1
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1.1k
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Comment: Comment: Queries on 10x sequencing 3' Read 1
3.1 years ago by rpolicastro 13k
0
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1
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7.5k
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Answer: Answer: Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_
3.0 years ago by rpolicastro 13k
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1.0k
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Comment: Comment: Modifying Vcf field into R
3.1 years ago by rpolicastro 13k
0
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1
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1.0k
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Comment: Comment: Modifying Vcf field into R
3.1 years ago by rpolicastro 13k
6
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1
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8.0k
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Answer: Answer: The difference between merge and integration with Seurat objects
3.1 years ago by rpolicastro 13k
0
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0
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2.2k
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Comment: Comment: Data Manipulation
3.1 years ago by rpolicastro 13k
0
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0
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1.4k
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Comment: Comment: Error in read.table(file = file, header = header, sep = sep, quote = quote, :
3.1 years ago by rpolicastro 13k
0
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4.1k
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Comment: Comment: How to show their orig.ident after Merging Seurat objects TWICE ?
3.2 years ago by rpolicastro 13k
3
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1
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3.8k
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Answer: Answer: Frequency of the gene expression in Seurat
3.2 years ago by rpolicastro 13k
0
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1
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3.8k
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Comment: Comment: Frequency of the gene expression in Seurat
3.2 years ago by rpolicastro 13k
0
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0
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3.4k
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Comment: Comment: Remove contamination across cell clusters
3.2 years ago by rpolicastro 13k
1
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0
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643
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Comment: Comment: Calculation of tRNA abundances from different cell types
3.2 years ago by rpolicastro 13k
0
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1
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4.1k
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Comment: Comment: How to show their orig.ident after Merging Seurat objects TWICE ?
3.2 years ago by rpolicastro 13k
0
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1
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2.0k
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Comment: Comment: Extract differentially expressed genes list from DESeq2 results for each of the
3.2 years ago by rpolicastro 13k
0
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1
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1.4k
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Comment: Comment: how to draw 3d histogram with errorbar using R
3.2 years ago by rpolicastro 13k
0
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0
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1.1k
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Comment: Comment: How to remove redundant sequences from fasta file ?
3.2 years ago by rpolicastro 13k
0
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0
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7.8k
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Comment: Comment: Which trajectory method is better !?
3.2 years ago by rpolicastro 13k
3
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1
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1.4k
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Answer: Answer: Create violin plot with specific value label that corresponding to graph
3.2 years ago by rpolicastro 13k
3
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1
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2.1k
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Answer: Answer: how to make box plot of specific row with group of sample in R
3.2 years ago by rpolicastro 13k
1
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1
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2.3k
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Comment: Comment: Why am I getting numbers instead of gene names in Seurat slot data?
3.2 years ago by rpolicastro 13k
0
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1
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1.5k
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Comment: Comment: scRNASeq analysis Transcript abundance and gene abundance
3.2 years ago by rpolicastro 13k
0
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0
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931
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Answer: Answer: Ways to analyze treatment changes in scRNAseq
3.2 years ago by rpolicastro 13k
1
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2
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2.5k
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Comment: Comment: desEQ2 eRROR
3.2 years ago by rpolicastro 13k
0
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0
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740
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Comment: Comment: Batch correction for DE analysis
3.2 years ago by rpolicastro 13k
0
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1
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1.0k
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Comment: Comment: ChIP-seq peak number so high
3.2 years ago by rpolicastro 13k
0
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1
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987
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Comment: Comment: What is the difference between filtering cells before creating Seurat object and
3.2 years ago by rpolicastro 13k
0
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1
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3.6k
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Comment: Comment: low FRiP(Fraction of Reads in Peaks) score in ATAC-seq
3.2 years ago by rpolicastro 13k
2
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1
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1.8k
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Answer: Answer: How to remove the header in fasta file and keep only the desirable part on ububt
3.2 years ago by rpolicastro 13k
1
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1
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8.0k
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Comment: Comment: Finding the significance of the overlap between 2 or more gene sets using simula
3.2 years ago by rpolicastro 13k
0
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1
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757
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Comment: Comment: edgeR parameters
3.2 years ago by rpolicastro 13k
0
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0
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2.5k
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Comment: Comment: How to calculate probability of overlap between two sets
updated 3.2 years ago by 102k • written 3.2 years ago by 13k
3
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1
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2.1k
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Answer: Answer: How to rename the elements in columns(txdb)?
3.2 years ago by rpolicastro 13k
0
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0
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1.4k
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Answer: Answer: Statistics on RNAseq data
3.2 years ago by rpolicastro 13k
0
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1
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3.3k
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Comment: Comment: DESeq2 normalization - Found Difference in values when calculated manually
3.2 years ago by rpolicastro 13k
0
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0
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2.4k
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Comment: Comment: Input of 173 genes into enrichGO but no pathways are shown
3.2 years ago by rpolicastro 13k
1,382 results • Page 14 of 28
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