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Comment: Comment: Input of 173 genes into enrichGO but no pathways are shown
3.5 years ago by rpolicastro 13k
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5.1k
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Comment: Comment: How to solve duplicate rownames error on R
3.5 years ago by rpolicastro 13k
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2.2k
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Answer: Answer: Interpreting likelihood ratio tests using DESeq2
3.5 years ago by rpolicastro 13k
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1.0k
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Comment: Comment: How to process batches to be able to correct for its effect
3.5 years ago by rpolicastro 13k
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1.0k
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Comment: Comment: How to process batches to be able too correct for its effect
3.5 years ago by rpolicastro 13k
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1.3k
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Comment: Comment: A question about scRNA-seq analysis
3.5 years ago by rpolicastro 13k
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988
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Answer: Answer: Doubts with Stacked barplot using R ggplot2
3.5 years ago by rpolicastro 13k
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1.8k
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Comment: Comment: cellranger count help
3.5 years ago by rpolicastro 13k
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3.6k
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Answer: Answer: How to export count data as .csv file in Seurat
3.5 years ago by rpolicastro 13k
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984
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Answer: Answer: relationship between DE-genes and DE-trascripts in deseq2
3.5 years ago by rpolicastro 13k
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1.3k
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Comment: Comment: batch correction in ChIp-seq data
3.5 years ago by rpolicastro 13k
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2.7k
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Comment: Comment: DESeq2 design
3.5 years ago by rpolicastro 13k
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5.3k
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Comment: Comment: Differential Gene Expression
3.5 years ago by rpolicastro 13k
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5.3k
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Comment: Comment: Differential Gene Expression
3.5 years ago by rpolicastro 13k
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1.8k
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Comment: Comment: Calculate TPM values from DESeq2 normalised counts
3.5 years ago by rpolicastro 13k
1
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1
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1.8k
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Comment: Comment: Looking up Gene IDs in R
3.5 years ago by rpolicastro 13k
2
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1
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5.7k
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Comment: Comment: How to convert log2 scale RNA-Seq expression data to linear scale data
3.5 years ago by rpolicastro 13k
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1.3k
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Comment: Comment: batch correction in ChIp-seq data
3.5 years ago by rpolicastro 13k
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1.9k
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Comment: Comment: UMAP of TRA/B
3.5 years ago by rpolicastro 13k
2
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1.5k
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Comment: Comment: Gene co-expression in single-cell RNA-seq
3.5 years ago by rpolicastro 13k
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1
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1.9k
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Answer: Answer: UMAP of TRA/B
3.5 years ago by rpolicastro 13k
1
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1
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1.8k
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Comment: Comment: Looking up Gene IDs in R
3.5 years ago by rpolicastro 13k
1
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1
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2.0k
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Comment: Comment: DESeq2 rlog-transformed RNA-seq data for machine learning input
3.5 years ago by rpolicastro 13k
3
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1
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1.8k
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Answer: Answer: Looking up Gene IDs in R
3.5 years ago by rpolicastro 13k
2
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1
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931
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Answer: Answer: Effect of difference in sample sizes on p-value
3.5 years ago by rpolicastro 13k
4
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3.5k
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Answer: Answer: Splitting a Seurat Object HTO classification
3.5 years ago by rpolicastro 13k
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1
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2.4k
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Comment: Comment: Counts all read zero after alignment?
3.5 years ago by rpolicastro 13k
1
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1
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2.0k
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Comment: Comment: How to create a label variable from a binary matrix with multiple columns
3.5 years ago by rpolicastro 13k
1
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1
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4.0k
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Comment: Comment: Signac CallPeaks from multiple fragment files
3.5 years ago by rpolicastro 13k
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1
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4.3k
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Comment: Comment: How do I match my transcript ID's from NCBI to the corresponding gene ID's to en
3.5 years ago by rpolicastro 13k
0
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1
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4.3k
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Comment: Comment: How do I match my transcript ID's from NCBI to the corresponding gene ID's to en
3.5 years ago by rpolicastro 13k
1
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0
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3.1k
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Comment: Comment: How to trim a GFF3 file based on specific coordinates?
3.5 years ago by rpolicastro 13k
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1
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1.2k
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Comment: Comment: DESeq2 design question
3.5 years ago by rpolicastro 13k
1
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1
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67k
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Comment: Comment: In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
3.5 years ago by rpolicastro 13k
1
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0
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5.9k
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Comment: Comment: seurat `<obj>@assays$RNA@counts` vs `<obj>@assays$RNA@data`?
3.5 years ago by rpolicastro 13k
0
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1
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744
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Comment: Comment: I can't find T cell receptors in my RNAseq expression table
3.5 years ago by rpolicastro 13k
1
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1
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4.1k
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Comment: Comment: how to Seurat::RunUMAP() but run reduction="pca" on subset of features?
3.5 years ago by rpolicastro 13k
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1
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5.9k
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Comment: Comment: seurat `<obj>@assays$RNA@counts` vs `<obj>@assays$RNA@data`?
3.5 years ago by rpolicastro 13k
0
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5.9k
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Answer: Answer: seurat `<obj>@assays$RNA@counts` vs `<obj>@assays$RNA@data`?
3.5 years ago by rpolicastro 13k
0
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1
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3.9k
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Comment: Comment: Gene read count-level batch correction in scRNA-seq?
3.5 years ago by rpolicastro 13k
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1
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3.7k
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Comment: Comment: Help with Pathway annotation after Seurat DE analysis
3.5 years ago by rpolicastro 13k
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1
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2.2k
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Answer: Answer: Velocyto for smart seq2 taking an excessively long time (and memory)?
3.5 years ago by rpolicastro 13k
0
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1
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3.7k
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Comment: Comment: Help with Volcano plot
3.6 years ago by rpolicastro 13k
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1
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3.7k
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Comment: Comment: Help with Pathway annotation after Seurat DE analysis
3.6 years ago by rpolicastro 13k
0
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1
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2.4k
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Comment: Comment: Is it possible for a cell cluster to not have cells of a certain condition?
3.6 years ago by rpolicastro 13k
1
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3
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3.7k
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Comment: Comment: Help with Volcano plot
3.6 years ago by rpolicastro 13k
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6.3k
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Comment: Comment: Going from Seurat object to DESeq2 analysis
3.6 years ago by rpolicastro 13k
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1
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1.6k
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Comment: Comment: Multivariable Design in EdgeR (Design matrix / model.matrix) - Tilde Use
3.6 years ago by rpolicastro 13k
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1
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1.6k
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Comment: Comment: Multivariable Design in EdgeR (Design matrix / model.matrix) - Tilde Use
3.6 years ago by rpolicastro 13k
1
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1
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2.0k
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Comment: Comment: how can I turn a skinny/long data frame into a Seurat object
3.8 years ago by rpolicastro 13k
1,382 results • Page 15 of 28
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