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922
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Comment: Comment: Combining multiple datasets increases the fgsea p-value
23 months ago by rpolicastro 13k
2
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0
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1.6k
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Comment: Comment: Adding lfcShrink to DESeq2 analysis
23 months ago by rpolicastro 13k
1
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0
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924
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Comment: Comment: Purpose of Seqinfo Circularity Attribute in GenomicRanges Objects
23 months ago by rpolicastro 13k
3
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0
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915
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Comment: Comment: Non-adjusted p-value used in publication
23 months ago by rpolicastro 13k
1
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0
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604
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Comment: Comment: DESeq2 with multiple conditional data
23 months ago by rpolicastro 13k
1
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0
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799
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Comment: Comment: Statistic analysis on overlap between RNA-seq and ChIP-seq dataset
23 months ago by rpolicastro 13k
0
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1
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2.5k
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Comment: Comment: Mean read length from bam file
23 months ago by rpolicastro 13k
1
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0
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2.5k
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Comment: Comment: Mean read length from bam file
23 months ago by rpolicastro 13k
1
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2
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2.5k
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Comment: Comment: Mean read length from bam file
23 months ago by rpolicastro 13k
3
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2
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1.0k
views
Answer: Answer: subsetting a data frame that has rows with values in more than one column in R
24 months ago by rpolicastro 13k
0
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1
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1.6k
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Comment: Comment: Box plots with logFC values
24 months ago by rpolicastro 13k
2
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1
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994
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Comment: Comment: Doubt on annotation of ensembl ids in biomart using R
24 months ago by rpolicastro 13k
0
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0
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644
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Answer: Answer: STAR Alignment
updated 2.0 years ago by 44k • written 2.0 years ago by 13k
0
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0
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1.1k
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Comment: Comment: featureCounts strandedness option
2.0 years ago by rpolicastro 13k
1
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1
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1.0k
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Comment: Comment: Evaluating RNASeq counts distribution
2.0 years ago by rpolicastro 13k
2
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1
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3.3k
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Answer: Answer: Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to G
2.0 years ago by rpolicastro 13k
0
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0
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594
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Comment: Comment: convert raw count to seurat object
2.0 years ago by rpolicastro 13k
1
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1
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620
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Answer: Answer: I would like to add a tag to all my fasta files
2.0 years ago by rpolicastro 13k
0
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0
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550
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Comment: Comment: Fastq
2.0 years ago by rpolicastro 13k
0
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1
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999
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Comment: Comment: seurat probelm
2.0 years ago by rpolicastro 13k
1
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1
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3.4k
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Comment: Comment: How to extract intron counts from total RNA Sequencing?
2.0 years ago by rpolicastro 13k
5
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0
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6.5k
views
Answer: Answer: Does a PhD or work experience set you up better to do bioinformatics work in ind
2.0 years ago by rpolicastro 13k
0
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1
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694
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Comment: Comment: Seeking assistance in scRNA Seq
2.0 years ago by rpolicastro 13k
0
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1
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1.4k
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Comment: Comment: Exporting NMDS distance matrix as csv in R
2.0 years ago by rpolicastro 13k
0
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0
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1.9k
views
Comment: Comment: From Seurat object to a dataframe
2.0 years ago by rpolicastro 13k
0
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0
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656
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Comment: Comment: Adjusting batch effects for known cell types and applying this transformation to
2.1 years ago by rpolicastro 13k
0
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1
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1.3k
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Comment: Comment: NAs using org.Hs.eg.db for Ensembl ID to Gene Symbol annotation
2.1 years ago by rpolicastro 13k
0
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0
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1.3k
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Comment: Comment: extracting gene names from clusterProfiler following gseGO
2.1 years ago by rpolicastro 13k
1
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1
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974
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Answer: Answer: Esembl geneID with Characters
2.1 years ago by rpolicastro 13k
1
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0
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894
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Answer: Answer: Adding numbers after duplicate headers in fasta files
2.1 years ago by rpolicastro 13k
0
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0
replies
1.9k
views
Comment: Comment: Seurat installation errors (configure: error: geos-config not found or not execu
2.1 years ago by rpolicastro 13k
0
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0
replies
3.2k
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Comment: Comment: CreateSeuratObject problem
2.1 years ago by rpolicastro 13k
0
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0
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1.1k
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Comment: Comment: Trouble using Bioconda packages (lima, isoseq3) with channel conda-forge
2.1 years ago by rpolicastro 13k
1
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0
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1.3k
views
Comment: Comment: problem with mixomics, packages in R
2.1 years ago by rpolicastro 13k
0
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0
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959
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Comment: Comment: Matching samples between big datasets
2.1 years ago by rpolicastro 13k
0
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1
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2.1k
views
Comment: Comment: Is it adviced to remove genes with very low expression in TPM data?
2.1 years ago by rpolicastro 13k
0
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0
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982
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Comment: Comment: How FDR, p-value and adjusted p-values are calculated in gseGO i.e. GSEA
2.1 years ago by rpolicastro 13k
1
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0
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1.8k
views
Comment: Comment: Wilcoxon test, t-test and negative binomial test for DEG of scRNA-Seq data
2.1 years ago by rpolicastro 13k
0
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1
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1.5k
views
Comment: Comment: How to plot all enrichment plots from GSEA in one single plot in python or R?
2.1 years ago by rpolicastro 13k
3
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1
reply
1.1k
views
Answer: Answer: Problem adding file names to fasta headers in multiple directories using awk
2.1 years ago by rpolicastro 13k
0
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2
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1.3k
views
Comment: Comment: Handling Multiple Sequencing Runs in scRNA-seq
2.1 years ago by rpolicastro 13k
0
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1
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1.1k
views
Answer: Answer: How to add illustrative bar in ggplot2?
2.1 years ago by rpolicastro 13k
1
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0
replies
632
views
Comment: Comment: What are the Distribution in transcriptomes ?
2.1 years ago by rpolicastro 13k
0
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1
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607
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Comment: Comment: why makeGRangesFromDataFrame don't do the IRange
2.1 years ago by rpolicastro 13k
0
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1
reply
1.1k
views
Comment: Comment: summing taxon counts per participant
2.1 years ago by rpolicastro 13k
2
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0
replies
1.8k
views
Comment: Comment: Parallel processing of bioinformatics pipeline - running deepbgc, bagel, and ant
2.1 years ago by rpolicastro 13k
0
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1
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910
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Comment: Comment: seqret: command not found
2.1 years ago by rpolicastro 13k
0
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0
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778
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Comment: Comment: Determining transcripts for repetitive elements in RNA-seq data
2.1 years ago by rpolicastro 13k
0
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1
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778
views
Comment: Comment: Determining transcripts for repetitive elements in RNA-seq data
2.1 years ago by rpolicastro 13k
0
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1
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864
views
Comment: Comment: preforming armitage test on chunks of data in R of VCF file
2.1 years ago by rpolicastro 13k
1,382 results • Page 6 of 28
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