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0
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1
reply
433
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Phenotype and organism model references for a large list of genes
database
updated 12 months ago by 161k • written 12 months ago by ▴ 30
0
votes
7
replies
1.2k
views
convert bedgraph to vector file and Granges list
vectors Granges R bedgraph
20 months ago by storm1907 ▴ 30
2
votes
10
replies
1.8k
views
convert bedgraph to Granges object
bedgraph
updated 21 months ago by 43k • written 21 months ago by ▴ 30
0
votes
1
reply
557
views
Best tool for genotype - phenotype correlation
analysis correlation
updated 2.0 years ago by • 0 • written 2.5 years ago by ▴ 30
1
vote
5
replies
1.1k
views
Extracting variant counts from Gnomad genome VCFs
gnomad
updated 19 months ago by ▴ 50 • written 3.1 years ago by ▴ 30
3
votes
3
replies
765
views
CNV and frameshift change
CNV
updated 2.4 years ago by 4.2k • written 2.4 years ago by ▴ 30
0
votes
1
reply
690
views
categorizing VEP annotations into consequences
VEP functional synonymous
updated 2.5 years ago by 23k • written 2.5 years ago by ▴ 30
1
vote
4
replies
5.8k
views
VEP cache issues
software-error vep ensembl
updated 2.3 years ago by 43k • written 3.3 years ago by ▴ 30
0
votes
2
replies
936
views
VEP output is only protein_coding
VEP
2.7 years ago by storm1907 ▴ 30
1
vote
3
replies
833
views
finding functional rare and synonymous alleles in a vcf file
exome variants
updated 2.7 years ago by 43k • written 2.8 years ago by ▴ 30
0
votes
6
replies
1.2k
views
extracting only one sex from gnomad genome v.3.1 file
gnomad
2.9 years ago by storm1907 ▴ 30
1
vote
6
replies
1.6k
views
convert Ensemble to HGNC symbols in a file with several columns
mariadb
2.9 years ago by storm1907 ▴ 30
1
vote
15
replies
3.6k
views
bcftools filter by protein prediction
bcftools
updated 2.9 years ago by ▴ 480 • written 2.9 years ago by ▴ 30
2
votes
5
replies
1.2k
views
filtering vcfs by at least lof variants
lof
2.9 years ago by storm1907 ▴ 30
0
votes
8
replies
1.2k
views
Convert "chrom:position" to gene name
gene R
updated 2.9 years ago by 43k • written 3.0 years ago by ▴ 30
1
vote
8
replies
2.8k
views
how to get iDs in VCF file?
VCF Deepvariant
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 30
5
votes
7
replies
1.2k
views
Creating numbered gene sets from a list of genes
Bash awk geneset
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 30
0
votes
1
reply
647
views
Counting column values before Fisher's test ends with NULL in R
statistics NGS R
updated 3.0 years ago by 11k • written 3.0 years ago by ▴ 30
2
votes
3
replies
848
views
extracting parts of vcf file
vcf plink
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 30
0
votes
6
replies
1.4k
views
GTF file procession
ncbi
3.0 years ago by storm1907 ▴ 30
0
votes
1
reply
732
views
bedtools intersect combined with filtering after particular word
bedtools
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 30
0
votes
24
replies
3.5k
views
converting spaces to tabs in gtf files
NCBI
3.0 years ago by storm1907 ▴ 30
1
vote
1
reply
533
views
tped files to bed with awk
plink
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 30
0
votes
1
reply
828
views
GFF/GTF file download from UCSC or gnomAD
GFF
updated 3.1 years ago by 8.6k • written 3.1 years ago by ▴ 30
0
votes
5
replies
1.0k
views
conversion from genomic to gene coordinates in a large file
plink
3.0 years ago by storm1907 ▴ 30
0
votes
14
replies
2.4k
views
File conversion from coordinates to genes
conversion
3.1 years ago by storm1907 ▴ 30
1
vote
5
replies
1.2k
views
calculation synonymous and non-synonymous allele counts in a VCF file
VCF
updated 3.1 years ago by 14k • written 3.1 years ago by ▴ 30
0
votes
0
replies
428
views
Tped file locus column to gene
plink
3.2 years ago by storm1907 ▴ 30
0
votes
3
replies
748
views
Risk calculation in pedigrees
genome
updated 3.2 years ago by ★ 2.9k • written 3.2 years ago by ▴ 30
0
votes
0
replies
407
views
STRING databases in exome sequencing
genome
3.2 years ago by storm1907 ▴ 30
4
votes
2
replies
1.1k
views
R with HPC
R
updated 3.2 years ago by 8.9k • written 3.2 years ago by ▴ 30
0
votes
4
replies
1.3k
views
bedtools intersect correct usage
genome
updated 3.2 years ago by ▴ 40 • written 3.2 years ago by ▴ 30
2
votes
4
replies
638
views
genome to exome
genome
updated 3.3 years ago by 82k • written 3.3 years ago by ▴ 30
0
votes
7
replies
835
views
Access to public exome files
next-gen
updated 3.3 years ago by 2.8k • written 3.3 years ago by ▴ 30
0
votes
1
reply
473
views
All human gene list
next-gen
updated 3.3 years ago by 142k • written 3.3 years ago by ▴ 30
0
votes
0
replies
522
views
Annovar Set ID
next-gen
3.3 years ago by storm1907 ▴ 30
2
votes
2
replies
776
views
gene set download
gene
3.3 years ago by storm1907 ▴ 30
0
votes
0
replies
851
views
Correct Annovar input
software error
3.3 years ago by storm1907 ▴ 30
0
votes
0
replies
584
views
SKAT O and IECAT
R
3.3 years ago by storm1907 ▴ 30
0
votes
0
replies
719
views
Burden test and vcf input
R
3.3 years ago by storm1907 ▴ 30
0
votes
1
reply
879
views
Variant calling with duplicates
next-gen
updated 3.3 years ago by 20 • written 3.4 years ago by ▴ 30
0
votes
1
reply
582
views
Bed file coordinates
genome
updated 3.3 years ago by 161k • written 3.3 years ago by ▴ 30
0
votes
1
reply
979
views
tissue specific gene list
RNA-Seq
updated 3.4 years ago by ★ 3.0k • written 3.4 years ago by ▴ 30
1
vote
3
replies
799
views
whole exome variant filtering
next-gen
3.4 years ago by storm1907 ▴ 30
0
votes
0
replies
582
views
convenient VCF comparison
sequencing
3.5 years ago by storm1907 ▴ 30
0
votes
2
replies
678
views
Comparing CoV2 sequences
sequence
3.5 years ago by storm1907 ▴ 30
1
vote
1
reply
710
views
rename files in a directory
unix
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 30
0
votes
2
replies
892
views
FASTA file header
consensus
3.6 years ago by storm1907 ▴ 30
0
votes
1
reply
712
views
LoFreq input file issues
assembly
3.6 years ago by storm1907 ▴ 30
2
votes
6
replies
1.0k
views
correct header with samtools mpileup
assembly
3.6 years ago by storm1907 ▴ 30
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