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Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
2.2 years ago by epigene ▴ 590
0
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0
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1.5k
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Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
2.2 years ago by epigene ▴ 590
0
votes
1
reply
1.5k
views
Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
2.2 years ago by epigene ▴ 590
2
votes
5
replies
1.5k
views
best pipeline/practice for analyzing WES for germline and somatic variant calling
calling variant
2.2 years ago by epigene ▴ 590
0
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1
reply
1.2k
views
Comment: Comment: Annotate variants for cancer genomics studies
3.9 years ago by epigene ▴ 590
0
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3
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1.2k
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Annotate variants for cancer genomics studies
oncology cancer genomics variant
updated 3.9 years ago by ▴ 840 • written 3.9 years ago by ▴ 590
0
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0
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14k
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Comment: C: Get Snp Position From A Python Interface.
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 590
0
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0
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4.4k
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Comment: C: How To Generate Random Size Matched Background Regions
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 590
7
votes
6
replies
6.9k
views
Adapter Trimming Length Cutoff And Quality Trimming Quality Cutoff
ngs
updated 5.8 years ago by ▴ 20 • written 11.2 years ago by ▴ 590
1
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0
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308k
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Comment: C: How To Filter Mapped Reads With Samtools
updated 6.9 years ago by 45k • written 8.8 years ago by ▴ 590
10
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8
replies
6.7k
views
Which source of annotation files to use, Ensembl or UCSC?
RNA-Seq ucsc ensembl
updated 8.0 years ago by 24k • written 8.9 years ago by ▴ 590
106
votes
23
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24k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 2.3 years ago by 45k • written 11.4 years ago by ▴ 590
6
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0
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24k
views
Answer: A: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
8.3 years ago by epigene ▴ 590
1
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0
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24k
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Comment: C: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
8.3 years ago by epigene ▴ 590
0
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1
reply
18k
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Comment: C: Subsample BAM to fixed number of alignments
8.4 years ago by epigene ▴ 590
0
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0
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2.7k
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Comment: C: how do aligners determine which reads to apply duplicate reads flag (1024)?
8.7 years ago by epigene ▴ 590
5
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5
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2.7k
views
how do aligners determine which reads to apply duplicate reads flag (1024)?
bwa sam
updated 8.7 years ago by 15k • written 8.7 years ago by ▴ 590
0
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1
reply
2.7k
views
Comment: C: how do aligners determine which reads to apply duplicate reads flag (1024)?
8.7 years ago by epigene ▴ 590
0
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0
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2.5k
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Comment: C: PE read flag 69 and 137 meaning
8.7 years ago by epigene ▴ 590
3
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2
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2.5k
views
PE read flag 69 and 137 meaning
sam flag
updated 8.7 years ago by ★ 5.0k • written 8.7 years ago by ▴ 590
0
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0
replies
2.8k
views
Comment: C: Where to download earlier versions of GWAS Catalog?
8.8 years ago by epigene ▴ 590
1
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4
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3.9k
views
Tools to analyze Illumina's HumanHT-12 v4 microarray expression data?
microarray gene expression
8.8 years ago by epigene ▴ 590
0
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2
replies
2.8k
views
Where to download earlier versions of GWAS Catalog?
GWAS
updated 2.8 years ago by 45k • written 9.6 years ago by ▴ 590
0
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0
replies
9.2k
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Comment: C: SAM flag and select reads that map uniquely
8.8 years ago by epigene ▴ 590
0
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1
reply
37k
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Comment: C: Samtools View: Only Forward Or Reverse Strand
8.8 years ago by epigene ▴ 590
0
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1
reply
39k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
8.8 years ago by epigene ▴ 590
0
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0
replies
11k
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Comment: C: Why The Properly Paired Results From Bwa Mem Is An Odd Number
8.8 years ago by epigene ▴ 590
0
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1
reply
9.2k
views
Comment: C: SAM flag and select reads that map uniquely
8.8 years ago by epigene ▴ 590
0
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0
replies
7.1k
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Comment: C: Single-end strand specific Rna-Seq: how to separate alignments by strand
8.8 years ago by epigene ▴ 590
0
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0
replies
9.2k
views
Comment: C: SAM flag and select reads that map uniquely
8.8 years ago by epigene ▴ 590
0
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1
reply
7.1k
views
Comment: C: Single-end strand specific Rna-Seq: how to separate alignments by strand
8.8 years ago by epigene ▴ 590
0
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1
reply
9.4k
views
Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
8.8 years ago by epigene ▴ 590
0
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0
replies
41k
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Comment: C: In Sam Format, Clarify The Meaning Of The "0" Flag.
8.8 years ago by epigene ▴ 590
1
vote
1
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41k
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Comment: C: In Sam Format, Clarify The Meaning Of The "0" Flag.
8.8 years ago by epigene ▴ 590
0
votes
1
reply
39k
views
Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
8.8 years ago by epigene ▴ 590
0
votes
1
reply
9.4k
views
Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
8.8 years ago by epigene ▴ 590
29
votes
7
replies
39k
views
SAM FLAG for primary alignments, secondary alignments and what's their relations to uniqueness of mapping
SAM
updated 8.8 years ago by ★ 1.3k • written 8.9 years ago by ▴ 590
0
votes
0
replies
2.2k
views
Comment: C: Is there a tools to select alignment from BAM files with particular tag value?
8.9 years ago by epigene ▴ 590
1
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2
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2.2k
views
Is there a tools to select alignment from BAM files with particular tag value?
bam
updated 8.9 years ago by 166k • written 8.9 years ago by ▴ 590
1
vote
0
replies
30k
views
Comment: C: What Does Cds And Exon Mean In A Gtf File?
8.9 years ago by epigene ▴ 590
0
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2
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6.7k
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Comment: C: Which source of annotation files to use, Ensembl or UCSC?
8.9 years ago by epigene ▴ 590
0
votes
1
reply
21k
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Comment: C: HISAT2 command help
8.9 years ago by epigene ▴ 590
0
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1
reply
21k
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Comment: C: HISAT2 command help
8.9 years ago by epigene ▴ 590
0
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0
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2.6k
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Comment: C: how to set reporting options for RNA-seq reads alignment with hisat2?
8.9 years ago by epigene ▴ 590
1
vote
2
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2.6k
views
how to set reporting options for RNA-seq reads alignment with hisat2?
RNA-Seq hisat2
updated 8.9 years ago by 48k • written 8.9 years ago by ▴ 590
0
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0
replies
3.9k
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Comment: C: GTAK VariantsToTable only generates header?
9.0 years ago by epigene ▴ 590
0
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1
reply
3.9k
views
Comment: C: GTAK VariantsToTable only generates header?
9.0 years ago by epigene ▴ 590
1
vote
4
replies
3.9k
views
GTAK VariantsToTable only generates header?
gatk VariantsToTable
9.0 years ago by epigene ▴ 590
0
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1
reply
9.2k
views
Comment: C: SAM flag and select reads that map uniquely
9.0 years ago by epigene ▴ 590
8
votes
8
replies
9.2k
views
SAM flag and select reads that map uniquely
samtools
updated 9.0 years ago by 105k • written 9.0 years ago by ▴ 590
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